Syngnathoides biaculeatus (alligator pipefish): 133500410
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Entry
133500410 CDS
T09681
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133500410 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133500410 (smg5)
03032 DNA replication proteins [BR:
sbia03032
]
133500410 (smg5)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
133500410 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
133500410 (smg5)
DNA replication proteins [BR:
sbia03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
133500410 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
HCMV_UL139
Motif
Other DBs
NCBI-GeneID:
133500410
NCBI-ProteinID:
XP_061675011
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All DBs
Position
5:978849..996336
Genome browser
AA seq
1101 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDVIVGSKASYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSVLECAYRTHLIAGVGFYQ
HLLLYVQSHYQLELQDCIDWTHVTDPLIGRKKAVSASPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAERLAERFYHQALSVMPHVGMPFNQLGTLAGGKSYNVEATYFYLRCIQSES
PFEGAYGNLKRLFDKAAKMYQQVKKQEMKKLSPSRQRYRDIKRLLVSFMYLTSRLQPKNS
LMESELTSLCQSVLEDFNLVLFYLPPHGHNDSARHSLSEEDDEQQQQQQQNSADGSWGVL
PDALVFKMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEAETQV
PPLNTDATVDADGSAERPMQNGSLEQEEEEEEEEEGAVAKSCVKEEHKSDEDKPKQQKKY
ARLSRLRRRRKDRGVEDESDLSEGFESEEDEGEEEDSAPAARDGPASAGCPPAAAPPDPA
ALREETKEEACWGSGSEEEEEEGDTAFDVETDSDMNSQESRSDLEDMDEAENCERQQAAT
RERRDGGDDEAKEEGEQMPPAANGPLGANDGSISSNLQAMSSQLFQAKRCFRLAPTFTNV
LLRPQASAKPPPSDDSAAASSRDTPGAAGQPPCDLNPGAPNGTNENDLDSDSEGSQLSAP
SVHSEKTLVERLAILTNQGLIQAVKVFVDWLRTNTDIVLMCAQSSQSLWNRLSVLLNLLP
DGNKMLEAEADLNPEVTELLGECERPALAQTLLLPEDVALRHLPALGVAHRRFDFSRRGA
SLSPLQECVVRVCCIRSFGHFLTSLQGNVLHFNPEAGIFTSVSQSQPDDLLQQAKAQFRM
AEKEARRNRLMRDMAQLRLQLEVSQLEGSLQHPKAQSSMSPYLVPDAAALCQHLGIVRHL
AGSGCFIVIIPRTVIDGLDRLKKENAGARDSIRFLESEFRKGNRYIRCQKESGRSFERDK
LKRQDLDAWHLYKMVDSCRQLSVSQSNDDDTAGMVTLLTGHPVDELCGRSAAMKSAVQAA
ISAGVELKNIADFYRQWKEIG
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagcggacctggacaggacagcgaaccggaggccaaagtccttctcatcaagcgcttg
tacagggcggtggtggagtcggtgcacaagctggacgtcatcgtcggcagcaaggcgtcg
tacagggaagtcttcaagccggagaacatcagcctccgcaacaagctgcgggagctctgc
gtcaaactgatgtttttacaccccgtggactacggccgcaaagctgaagagttgctttgg
aggaaagtttactacgaagtcatccaggtcatcaagactaacaagaagcacatccacagc
cgcagcgtcctggagtgcgcctaccgcacgcatctgattgccggcgtcggcttctaccag
cacctgctgctctacgtccagtcgcactaccagctggagctgcaggactgcatcgactgg
acgcacgtcaccgacccgctcatcggccggaagaaggcggtgtcggcctcccccaaggaa
atggagtgggcgcagatggcctgtcaccgctgcctggtctacctcggagatctcgcccgc
taccagaacgagcttgccggcgtggaggcggagcgtctggccgagagattctatcaccag
gcgctgtccgtcatgccgcacgtgggaatgcctttcaaccaactggggacgctggccgga
ggaaagtcttacaatgtggaagcaacttatttctaccttcgttgtatccaatcggagagc
ccgttcgagggcgcctacggcaacctgaagcgcctctttgacaaagcggccaagatgtac
cagcaagtgaagaagcaggagatgaagaagttgtcgccttctcgacagagatacagagac
atcaaacgtctccttgtgagcttcatgtacttgacgagccgcctgcagcccaagaacagc
ctgatggagtccgagttgacctcactgtgccagtcggtgctggaggacttcaacctggtg
ctcttttacttgcccccgcacggccacaacgactccgctcgccactccctgagcgaggag
gacgacgagcagcagcagcagcagcagcagaactctgccgacggctcgtggggcgtgctg
cccgacgcgctggtgttcaagatggtggtgacgtgcctcatggtcgtgcacagcctaaag
agaggaggctcaaagcaatacagcgcctccatcgcttttacactggcgcttttctcccat
ctggtgaaccacgtcaacatccgactccaggcggaactggaggaggcggagacccaggtg
ccgccgctcaacacggacgccacagttgacgcggacggctcagccgagcgaccgatgcag
aacggctccttggagcaagaggaggaggaggaggaggaggaggagggcgccgtcgccaag
agctgcgtgaaggaagaacacaagtcggacgaggacaaacccaagcagcaaaagaagtac
gcccggctgtcacgcctgcgcagacgccgcaaagaccgcggcgtcgaggacgagagtgac
ctgagcgagggctttgagagcgaagaagatgaaggcgaggaggaggactcggcccccgcg
gcgagagatgggcccgcgtccgccggttgccccccagccgccgcgccgcccgatccggcc
gccctccgggaggagacgaaggaggaggcctgctgggggagcggctccgaggaggaagaa
gaggagggcgacacggctttcgacgtggagacggactcggacatgaacagccaggagtcc
cgctcggacctggaggacatggacgaggcggaaaactgcgagcggcaacaggccgcgacc
cgggagcggcgggacggcggtgatgacgaagccaaggaggaaggcgagcaaatgcccccc
gccgccaacgggcctctgggggccaacgacggcagcatcagcagcaacctccaggccatg
tcgtcgcagctcttccaggcaaagcgctgcttccgcctggcgccaacattcaccaacgtg
ctgctcaggcctcaggcctccgccaagccccctccctcggacgactccgccgctgcgtct
tcccgggatacccccggcgccgccggtcaaccgccctgcgacttgaaccccggcgccccc
aatgggaccaatgaaaacgacttggactctgactcggaaggcagccagctgagcgccccg
tcggtgcacagcgagaagacgctcgtggagaggctggcaatcctgaccaatcagggcttg
atccaggcggtgaaggtcttcgtcgactggctccggaccaacaccgacatcgtcctcatg
tgcgcgcagagttcccagagcctctggaaccgcttgtctgtcctcctcaacctgctgccg
gatggaaacaagatgctcgaagccgaggccgacttgaacccggaggtgacggagctgctg
ggcgagtgcgaacgtcccgccctggcgcagacgctgctgcttcccgaggacgtggcgctg
aggcacctgcccgccctcggcgtcgctcaccgccgcttcgactttagccgccgcggagcc
tccctcagcccgctgcaggagtgcgtggtgcgcgtgtgttgcattcgcagttttggccac
ttcctcacgagtctccagggcaacgtgctgcacttcaacccggaggcgggcatcttcacc
agcgtcagccagtcgcaacccgacgacctgctgcagcaggccaaggcccagttccgaatg
gcagaaaaggaggcccggcgaaaccggctgatgcgggacatggctcagcttcgactgcag
ctggaggtgtcgcagctcgagggcagccttcagcacccgaaggcgcagtcgtccatgtcg
ccctacctggtgcccgacgccgccgccctctgccagcacttgggcatcgtccgacacctg
gcgggcagcggctgcttcatcgtcatcatccccaggacagtgatcgacgggctggaccga
ctgaagaaggaaaacgccggtgcgcgcgacagcatccgcttcctggagtctgagtttcgg
aaaggcaacaggtacatccgctgccagaaggaatcgggccgaagttttgaaagagacaag
ctgaaacgtcaagacctcgacgcctggcacctgtacaagatggtggacagctgccgccag
ctcagcgtctcccagagcaacgacgacgacacggccggcatggtgacgctcctcaccgga
catccggtggacgagttgtgcgggcgctcggcggccatgaagtctgccgtccaggcggcg
atctcggcgggcgtggagctgaagaacatcgccgacttctaccggcagtggaaggagatc
ggctga
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