Syngnathoides biaculeatus (alligator pipefish): 133500417
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Entry
133500417 CDS
T09681
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133500417 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133500417 (cnot3a)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133500417 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133500417 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
133500417
NCBI-ProteinID:
XP_061675035
LinkDB
All DBs
Position
5:13282408..13302076
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AA seq
905 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIDELKRLIERHRFHI
RMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALVA
TSPSGQGNMEDEMYLHSSSTPTSTTSSSPIPPSPATCAAENSEDDKKRGRSTDSEVSQSP
VKNGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGVPVVPTSSGLIGSFSSAVQQHQHLP
AQQQQQPQPQNQSQQQQPPLSKPSGPSNSTPSPPSNLLLPASTTPSLPTPSTPISSAASS
LSQPSSGSTPVSNLGLGIGLGLGKGGITGTSSANQMSALGLGVHSTSLSTMAGLISGSTP
APYAQAAAGGLGLSSSSTPSSISVESSTSIITTSGSSGVTTNGAATTLGLLGSGAGHGSL
SGSILGLVSGQNSSPAASQVPPSSVSASPGVVGMMGGNGGNVGMVGGVSAAPARPPSGLK
QNGSTSYSAVVAESSTESALSTPSQSQSSQPSSLSSSTSQPLDNGPSLISSITLPPSSPS
PSFSDSTPGGGSLLNGPHSYTQTSEGLKAPEPLISLKAMAERAALGSGLDGDIPNLHLTE
RDIFSSSTASGTPAAPQPSVSEVSIPPSLGVCPLGPTLLPKDQVYQQAMQESAWTHMPHP
SDSERIRQYLMRNPCPTLPFHYQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSA
KALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLE
DRDLQ
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaacttcaaggtgagattgacagatgcttgaaaaaagtagcggaa
ggcgtcgaacagtttgaagacatttggcaaaagcttcacaatgccgccaatgcgaaccag
aaggaaaaatacgaagctgacctcaagaaagagattaaaaagttacagcgattgagggat
cagataaaaacatgggtggcctccaacgagatcaaagacaaacggcagctagtcgagaac
cgcaagctcatcgaaacgcaaatggaacgattcaaggtggtggaacgggaaacgaaaaca
aaagcctactccaaggaaggcttggggcttgctcagaaagtggatccagcgcagagggaa
aaggaggagacgggacagtggctaacaaacacgatagacactctaaatatgcaggtcgat
cagtttgaaagcgaggtggagtctctttcggttcaaacaagaaagaagaagggcgataag
gagaagcaagatcgcatcgacgagctcaagcggttgatcgagaggcaccggttccacatc
cgcatgttggagacgattttgcggatgctggacaacgactctgtgccggtggacgccatt
caaaagatcaaagatgacgtcgaatactatattgattcttcacaagaccccgactttgaa
gagaatgagttcctgtacgacgacttagacttggaagacatccctgcagcattagtggcc
acgtctccgtcgggtcagggcaacatggaagatgagatgtacctccactcgagcagcact
cccacttccaccacttcgtcgtcacccatccccccatcgccggccacttgcgctgctgag
aactcagaggacgataagaaaaggggacggtcaacagacagtgaagttagtcagtcacct
gttaagaatggcacaccctctctactctcctccttctcttcatccaccacgtccggctcc
tcttcctcctcctccctggtgtccatggcgagcgtggtcggaggcgtgcctgtggttccg
accagcagcggcctaataggaagcttcagcagcgccgtgcaacagcatcagcatctgccc
gcgcaacagcagcaacaacctcagccacagaaccaatcgcagcagcagcaaccgcctttg
tccaaaccctcgggcccctcaaacagcacccctagtccgcccagcaacctgctgctccca
gcatccactaccccgtctctgcccacacccagcacgcccatttcatcagctgccagttcc
ctatctcagccctcatctgggtccacacccgtgtccaacttgggactggggattggcctg
ggcttaggcaaaggtggcatcacagggaccagcagtgccaaccagatgtcggctttaggc
ttgggggtccactccacgtccctgagcacaatggcggggctcatttcagggtcaacgccc
gccccttacgcgcaggcggcggcggggggcctgggcctgagcagcagcagcacgccatcc
agcatttcagtggaaagcagcacttccatcatcaccacatctggctccagtggagtcacc
accaacggggcggccacgacgctcggcctgctcggctccggcgccggccacggctcgctg
agcggcagtattctgggcctggtgtccgggcaaaactcgtcgcccgccgcatctcaggtg
ccccccagttccgtcagcgcttctcccggagtggtcggcatgatggggggcaacggcgga
aatgttgggatggttggaggtgtgagcgccgcgcccgcacgaccacccagcggactcaag
cagaatggaagcacaagttacagtgccgtagtggctgaaagttccacagaatcagctctc
agcacaccaagccagtctcagagcagccagccgtcatccctcagttcatcaaccagtcag
ccgttggacaatggtcccagtttaatcagctccatcaccctaccccccagctcgccatca
ccctcattttcggacagcacacccggcggaggaagcctcctcaacggacctcactcctac
acgcagacttcagagggtctcaaggctcccgagcctcttatctccttgaaggccatggcg
gagagggcggccctgggatcaggccttgatggcgatatcccaaacctgcacctaacggaa
cgagacatcttctcgtcgtccacggcatccggcaccccagccgccccccagccctccgtc
tccgaggtcagcatcccaccgtcgcttggcgtctgtccgttggggcccaccctcctcccc
aaagatcaggtgtaccagcaggccatgcaggagtcggcgtggacgcacatgccgcacccg
tccgactctgagaggatcaggcaatacctgatgaggaacccgtgccccaccctccccttc
cattatcagatgcctccccaccactccgactccattgagttctaccagcgactgtccaca
gaaacactgttttttatcttctactacctggagggcaccaaggctcagtatctgtccgcc
aaggcgctgaagaagcagtcgtggaggtttcacaccaagtacatgatgtggttccagagg
cacgaggagcccaagactatcactgacgaatttgaacagggcacttacatttactttgac
tatgagaaatggggccagcggaagaaggagggcttcacgtttgagtacaggtacctggaa
gaccgagacctgcagtga
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