Syngnathoides biaculeatus (alligator pipefish): 133500515
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Entry
133500515 CDS
T09681
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbia03000
]
133500515 (prdm1a)
Transcription factors [BR:
sbia03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
133500515 (prdm1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_jaz
zf-met
B129_C2H2-zf
zf-C2HE
TP_1001_2nd
Motif
Other DBs
NCBI-GeneID:
133500515
NCBI-ProteinID:
XP_061675262
LinkDB
All DBs
Position
5:complement(10565845..10577747)
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AA seq
743 aa
AA seq
DB search
MCGWDQSYTATSQSSAMLTSEGAHTMEQDASHHGAKMASISSDGVRLDPSVEMDAVDAGD
EADMTRWTEAEFEEKCTYIVKDSTWDAGAEGDANANAANTAGIRAQASLPRNLMFKHTSD
GKEVVGVCSREYIPKGTRFGPLVGQIYTANSVPKDANRKYFWRIYADGDFHHFVDGLDES
RSNWMRYVNPAHSVAEQNVAACQNGLDVYFYTIRPVPAGAELLVWYCHDYARRLHYPPSG
ELMMQKLKQSLLEVKQHQASAPSPPTSATSRAPKREHSVLSILRDVPKSEPSRPLPTRSC
FAYSPERPLYPRALYPPLRGHPEEFLKASALGYPRSPGDQSSATPGSSARSSPESCPQGS
PSVPFYPGGLGPYPSYSPPSAAPLSPFYPPAAPYSRYLLPHHYALPGGGVPTVGGIYPRM
YPLYLPPNVPLIPSDVAGRRFLMSDATHPSRDFLLPAPTSAFSAAASLKDKASSHRSPPA
RSPVAGVPGERAPTKLCDSDEEAVNLVKVKRGVGSAGYKALPYPLKKQNGKIKYECNVCT
KTFGQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFS
STSNLKTHLRLHSGEKPYHCKLCPAKFTQFVHLKLHKRLHSRERPHKCPQCHRHYIHLCS
LRLHLKGYCPAAAHHHVAADEVQHANEEIERFDMSEHAEQLERLQSGAELDAVLEKQVLG
AGWRQTSVIKVRRGLAVKQEADV
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggatgggaccaaagctacacggcgacctctcaaagctcggccatgttgaccagt
gagggggcgcacaccatggagcaggacgcctcccatcacggcgccaagatggcctccatc
agctcagacggcgtccggctggacccgagcgtggaaatggacgccgtggatgcaggggat
gaggctgacatgactcgctggactgaggccgagtttgaggagaagtgcacatacattgtc
aaggatagcacgtgggatgccggagcggagggggacgctaacgctaacgctgctaacacc
gccggcatcagggcacaggcttcactgccccggaacctcatgttcaaacacacgtctgat
ggaaaagaggttgtgggcgtatgcagccgggagtacatccccaagggcacacgtttcgga
cccctggttggccaaatctacacagccaacagcgtgcccaaagacgccaaccgcaagtac
ttctggcggatctacgccgatggcgacttccaccattttgtggacggcctggacgagtct
cgctccaactggatgcgctacgtgaacccggcccactcggtggccgagcagaacgtggcg
gcctgccagaacggcttggacgtttacttctacaccatcaggcccgtgccggccggcgcc
gagctcctggtgtggtactgccacgactacgcgcgcaggctgcactacccgccatccggg
gagctcatgatgcaaaagctcaaacagtccctgctggaggtgaagcagcatcaggcgtct
gccccctcgccacccacctccgccacctcccgggcccccaagcgggagcacagcgtgcta
tccatcctgcgggatgtccccaagagcgaaccgagccgccctctgcccacgcgctcgtgt
ttcgcctacagccccgagcgccccttgtacccacgcgccctctacccacccctaagggga
caccccgaggagttcctaaaagcgagtgccctgggttacccccgttcccctggcgaccag
tcgtccgccactcccggctcatcggcgaggagcagcccagagagctgcccccaggggagc
ccgtccgtgcctttctacccaggcggactggggccgtaccccagctactctccgccgtcc
gccgccccgctgtcgcctttctaccccccagcggcgccctactctcgctacctcctgcca
catcactatgcacttcctgggggcggtgtccccaccgtggggggtatttaccccaggatg
tacccgctttatctgccaccaaacgtgcccctcattccctcagacgtggccgggcgacgt
ttcctgatgtcagacgccacccacccttcccgggacttcctcctaccggcacccactagc
gccttctcggcagccgcctccctcaaagacaaggcgtcctcgcaccggtccccacccgcc
agatccccagttgcaggggttcccggggagcgggcgcccaccaagctgtgcgactcggac
gaagaggcggtgaatctggtgaaggtgaagagaggcgtcggctctgccgggtacaaggcg
ctgccctacccactcaagaagcagaatgggaaaatcaagtatgagtgcaacgtgtgcacc
aagaccttcggacagctctccaatcttaaggtccacctccgcgtccacagcggcgagcga
ccgttcaagtgtcagacgtgcaacaagggcttcacgcagcttgcccacctgcagaaacac
taccttgtccatacgggagagaaaccgcacgagtgccaggtgtgccacaagcgcttcagt
agcaccagcaacctgaagacccacctgcgtctccactcgggggagaagccgtaccactgc
aagctgtgcccggccaagttcacgcagttcgtccacctcaagctccacaagcgcctgcac
tcccgcgagcggcctcacaagtgcccgcagtgccatcgtcactacatccacctgtgcagc
ctgcgccttcacctcaagggctactgcccggcggccgcccaccaccacgtcgccgccgac
gaggtccaacacgccaacgaggaaatcgaacgcttcgacatgagcgagcacgccgagcaa
ctggagaggctccaaagcggagccgagttggacgccgtcttggagaagcaggttctgggg
gccgggtggcgccagacttcggtcatcaaggtgcggcgcggacttgccgtcaaacaggag
gcggacgtgtga
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