Syngnathoides biaculeatus (alligator pipefish): 133500619
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Entry
133500619 CDS
T09681
Symbol
pop1
Name
(RefSeq) ribonucleases P/MRP protein subunit POP1 isoform X1
KO
K01164
ribonuclease P/MRP protein subunit POP1 [EC:
3.1.26.5
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
133500619 (pop1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sbia03009
]
133500619 (pop1)
03016 Transfer RNA biogenesis [BR:
sbia03016
]
133500619 (pop1)
03029 Mitochondrial biogenesis [BR:
sbia03029
]
133500619 (pop1)
Enzymes [BR:
sbia01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
133500619 (pop1)
Ribosome biogenesis [BR:
sbia03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
133500619 (pop1)
Transfer RNA biogenesis [BR:
sbia03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
133500619 (pop1)
Mitochondrial biogenesis [BR:
sbia03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
133500619 (pop1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POP1_C
POP1_N
POPLD
Motif
Other DBs
NCBI-GeneID:
133500619
NCBI-ProteinID:
XP_061675523
LinkDB
All DBs
Position
5:complement(18171797..18202695)
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AA seq
955 aa
AA seq
DB search
MSAAKVKMRQKKLRNQPSSVQFVSERVGEEDIPHPNGGGGDGPSDQLPVRKKSSNQQTGW
VRGHQKDGGVYADKMPQYITAGVFARARATEVRAMLKAVTKTTGSCQIFGALPKHMRRRA
MSHNTKRLPCRLREMANKMREKCLQGSFKKKAHSKNKSRKARRHHGNLLLEFNRRQRKNV
WLETHIWHAKRFHMVKKWGYSLGDRPTLKCYRPCYRAMSTHCLLQDLSYYCCLELQGEED
KLLDCLSQLTSKETGPTFAQRLCLSGQRQGSVVLYRAGQFPLKPLGPATFLWRPRTLGTV
YRQIWTWVHPILKQDILTEFLSVCQCHEAVVPPSVPYCAEGIFSTDSESKSEINQALGTK
RKQSKKDRSGPPPKKILGDGTRSPNTPTTWKSSSTGILINDLTMEIVRYRLIGPQSHSVL
ADALEAATNCDELSKSQPSCLWWPDHCKDELKMKLHQQQTDIFHLLKGIYSTAELPPGTV
LGLTVDDPRLNIPTKKVKVLPCVKEAQEVDDDRRKELSLHGVPEHCCQSFLWQQSVRNNV
TDNKMSEQDLNRMRSEVLVPGSRLSPIPPQCRVPILLVHQPGKQEGHEMSSWGAGWDLML
PKGWGMAFWIPLVYRGVRIGGLKMSLTHSQNKGVPHFPHDYPDCPGGACFQEEQESELLE
KFKRRPPAKRINYIKHGCLAPFGCPWQQLAEEWDVIGSDGEEKKGDIQAKSTLQGNKAIQ
SEIMSHHEVPATNPQTHFTVLRNRKSLRLLSSWCRPTSCKGQRLYGVREMTPLDHAAKMS
FQARHGMSLVWVRLSLLLKGKPDLHTMVCVPTSDDLKLLNEGHVSRGPQEPRHKDHLKST
IKHSKSKSKDTPSITDQTTTMFEKPQSSSPASDFVLGVWPNPLPSVTSHCSRVTLGWVTQ
ADFSLSAGSGEALGFVSVTGLIQTLISQPLEHRGIVLLRNTKSLQYRFAKINIEV
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgcaaaagtcaaaatgcgacagaagaaactgagaaaccagccctccagtgtg
cagttcgtgtccgagcgtgttggtgaggaggacattccccatcccaacggtggaggtggt
gatggtccatctgatcaacttccagtaagaaagaagagctccaaccaacagactgggtgg
gtccgtggacaccagaaagatggtggagtctatgctgacaagatgccgcagtatattact
gctggagtttttgccagggccagggcaacagaggtaagagccatgctgaaagctgttacc
aagaccacaggcagctgtcagatctttggagcgctgccaaagcatatgagaagaagagca
atgagccacaacaccaagcgtcttccttgccggctgagagagatggccaacaaaatgagg
gagaaatgcctgcagggcagctttaaaaaaaaggcacactctaagaacaagagccgcaaa
gctcgtcgccatcatggaaacctgctgctggagttcaaccggcgacagagaaagaatgtg
tggttggagacgcacatttggcatgccaagcgctttcacatggtaaaaaagtggggctat
tcccttggggacagacccaccttaaaatgctaccgcccctgctacagagccatgagcact
cattgtctgctccaggacctgtcgtactactgctgcctagagcttcagggagaggaagac
aagctattggattgtctgtcacaactgaccagtaaagagactggccctacatttgctcaa
cggttgtgtctgtcgggacaaagacaaggtagcgtggtgttgtacagggcagggcagttc
cccttgaagcctttgggcccagctacattcctctggagaccccgtacattgggcacagtt
tacaggcaaatctggacctgggttcatcccattcttaaacaagatatcctcacagagttt
ctaagtgtgtgtcagtgtcatgaggctgtggtccccccgtccgtgccatattgcgcagag
ggaatcttcagcacagattcagaatcaaagtctgaaatcaaccaggcacttggaactaaa
agaaagcaaagcaagaaggataggagtggacctcctcctaagaagatcctgggcgatggc
accagatcacccaacacccctactacctggaaatccagctcaactggaatattaatcaat
gatctcacaatggagattgtacgataccgcctgataggaccgcagtcccattcagtgttg
gcagatgctttggaagctgctacaaactgtgatgaattgagcaaatcccagccctcctgc
ctttggtggcctgatcactgtaaagatgagctcaagatgaagctccatcagcaacaaact
gacatctttcacttactgaaaggcatctactcaactgcagagctcccacctggcacagtg
ctcgggctgacagttgatgacccgaggcttaatataccaacaaagaaggttaaagtgttg
ccctgtgtaaaggaggcacaagaggtggatgatgacaggagaaaggagctgtctttgcac
ggtgtaccagaacactgttgtcagagtttcctctggcaacaatctgtgcgcaacaatgtc
acagacaataaaatgtcagagcaggatttgaaccgtatgaggagcgaggttctggtgccc
gggtccaggcttagccctattcccccacagtgtcgagtccccatcttgctggttcaccag
ccaggcaagcaggagggacatgagatgagttcgtggggtgctggatgggacctgatgctt
cctaaaggctggggaatggctttttggatccccctggtgtatagaggtgttcgaattggt
ggactaaaaatgagtctgacacacagtcagaataaaggtgttcctcacttcccccatgat
tacccagactgccctggaggagcctgttttcaggaggagcaagagtctgaactgcttgaa
aagttcaaaagacgtccgcctgccaaaagaatcaattacattaaacatggctgcctggct
ccattcggttgcccttggcaacagctggctgaggagtgggatgttattggaagtgatgga
gaggagaaaaaaggagacatccaggctaaaagcacattgcagggtaataaagcaatccag
tcagagataatgtcacatcacgaagtccctgcgacaaacccacaaacccacttcactgtc
ctgaggaacaggaagtcattgaggcttctctctagttggtgcagacccacttcatgtaaa
ggtcagaggttgtacggtgtaagagaaatgacacctttggaccatgctgcaaagatgtca
ttccaagcaagacatggcatgagtctggtttgggtacgtctgtcactgttgttgaagggt
aagccagacctccataccatggtgtgtgttcccacttccgatgacctcaaactgttgaat
gaagggcatgttagtcgcggccctcaggagccccgccacaaggaccacttgaaaagcacc
atcaaacatagtaagagtaaaagtaaagacactccttcaatcactgatcagacgaccacc
atgtttgaaaagccccagtcatcttctcctgcttctgattttgttttgggagtgtggccg
aatcccctgccaagtgtcacctctcactgctccagagtgacgctaggctgggtgactcag
gcagacttctccctgtctgcagggagtggggaggctcttggctttgtgagtgtcactggc
ctcatccagacactcatcagtcaacctctggaacacagaggaatagtgctgctacgcaat
accaagtctcttcagtaccgctttgctaaaattaacatagaggtttga
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