KEGG   Syngnathoides biaculeatus (alligator pipefish): 133500674
Entry
133500674         CDS       T09681                                 
Symbol
mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
sbia  Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:sbia00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sbia03400]
    133500674 (mdc1)
DNA repair and recombination proteins [BR:sbia03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    133500674 (mdc1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 FHA BRCT
Other DBs
NCBI-GeneID: 133500674
NCBI-ProteinID: XP_061675667
LinkDB
Position
5:complement(31608388..31625304)
AA seq 1870 aa
MDATQVINDSVFEPDEEENEEEKTDKGRQPLAKLCILKNDYVPETEFPLFIGDNVLGRDI
DTCTLPLLAPCVSKQHATICITVHRRRGSRSGADVEALVWDLGSMNGTRKGRLKLTPNVR
YALSEGDRLVMADIPCQYVGVTDALEDVGSGTSSVCSSFLGDSVKESDSINVSASKVPPL
GEAKKPAPSRCLSFEATSVHPHGPVVPDFDSYSDGEKPRGRELRCKLLGSDSNSNNATLT
CSTSISPANKIFPESSDCGDLSHITPNASTREKPHEHVSFSKKEPDVDVGGQYKNNMLEI
VDDSDEEEAGAVENGQTLGRAMLKEEEHTVPEQLKSKASFTEESSQMSTTTVSTLGIPKF
NMDSDTDIEAEPVEDQRPSAVCFHMDSDTDLDEEDDTTPPPVHPDGPVSHMSADAKKVDA
TPPVPLDDVQLDSSRELDMEASGTSCDATPSRLNLIGDISKSDDNQAPVFSTHVSVSDSA
TQSNDSSAVRDPPHLSPVTTAPSSVTPGITAAAAQSVSDADTNMDESNVASADQDSDTDL
EEEKNPIILPGIKPSCLKGPHLQHTSTPVQLSGGFNSPVRSSALFPCSNSQEEEDFIVAE
TQSFILHTQGEVQSGIHDAIQASVHESSIKDMEELPSRGASFQLGLSDSSHLESAGQSLA
VERTQAFGSVTEADTQAFADISSSGTGSLGKDLNMEATQAKKASARSLVLFEGEQGNLAL
QETQPYISEPYSESEEDPEEDIETQPFPLSTSSTLALAETKLMTAIQEDEHPNTNSPVAH
LQPNQIAEGTDLSTSSLADNCHHTSIAATQPIATNEESYENLIPILRNEKVHLNKKNQPN
MNSYNLAANHQPPSIAVTKPMATTKNEEIDTKNLIEVTCESKVPLNKERQPSMSACDLPV
ATQHMNIAATQPLATSENEESNDEDLGPVFCKRKLQHDKEPQPRSNAYNLATNHQSMSIA
PTQPMAASESEETDVEDSIGVHVDTRKVQLGKEMQSKRSSNVMAITPLAVSIPETQPLAT
SANEESSEEDDSMPVMFHKRKARPQQINEDSQSLSSTLKIPKERFNDKSLLKYRDQGQGT
SREPPSVTSIQPDKEKSQPNHDTPPKYDKDKSTLGQEKIETQTVVTSKVSSAATQLVDTS
EEEEADSEILIPGPRKRKARPLQIEDETQPLVCSQAEETETSVVERKPMSTSEPSPQALQ
NQSKVRNSTTKHSREISQLREKEERIVKRQVIGNKARGRTGKCRPAGTKSEDEATRHQTN
IFEVQNRERERRQNEITQKESKEREEPEQLKGAEEQQGCEKLETERKDRPKQDRADKELQ
QSKEEIPQATQRGRRVSRRTIAVSHTPDQEDVPAKRTRSRSNSSNSISSEVSTSSTQGSK
GRGQGVKRSSGPYQAPITRWRTVAAGLTEQSEQGSCEASPPGVLLTSTSSNSIALENSCN
SSPISQRVRGTRQGRRGAKTESVPNSITPAFIQNPAPQPTPRGKRGRKPDLLTTKLSDEE
EEMPESKQAAATRGRRRANVKEPLNNSAAESPLPKRNSRARVQKTVKSETSETQIGPPTR
DEREVQGKRERRKRVLEAHVKDENPTPVQAKRKAGASCTKEGRNAKESPPATAIQDGNAE
SLVPGENAQTTISSKRKTRDSSVNSHSSSLLSRRPQDLSPSYKVLFTGVVDDAGERVLAR
LGGTLANGIGDMNCLVTDKVRRTVKFLCAVAKGIPIVNTHWLAKSGKAGSFLSPDVFIVK
DPEQEKQFGFCLQESLRLARSQPLLQGYEIHVTKSVKPEPVYMKDIISCSGATFLLKMPS
SHKPHTMVISCTEDWPLCRTAVSASLPVVSAEFILSGILQQKLNFEAHKLSGPPHQLQPA
GGRRQSRRKT
NT seq 5613 nt   +upstreamnt  +downstreamnt
atggacgccactcaagtcatcaacgactccgtcttcgagccagacgaggaggaaaatgaa
gaagaaaagacagacaaggggcgtcaacctttagccaagctgtgcatcttgaagaatgac
tacgttcctgaaacagaatttcctctttttatcggggataacgtgcttggtcgtgacatt
gacacctgcacgctgcccctgctggcgccctgcgtgtccaaacagcacgccactatctgc
atcaccgtccaccgcagacgaggatcccgcagcggtgcggatgtggaggctttggtttgg
gacttgggcagcatgaatggcacccgcaagggccgcctgaagttgactcccaacgttcgt
tacgcactgagcgagggagaccgtctggtgatggcagacatcccttgtcagtacgtaggc
gtcaccgacgcactcgaggacgtcgggagcggaacgtcaagtgtttgttccagttttctc
ggtgattctgtaaaggagagcgatagcatcaatgtgagtgccagcaaggtgccgcctctg
ggtgaagcaaagaagcctgcaccgagcaggtgtctgtcctttgaggccacttcagtccac
ccgcacgggccagtggtcccagacttcgactcatactctgatggggagaagccaaggggc
agagagctcagatgcaagcttctagggtctgattctaactcaaataatgcgacccttacc
tgttcaacctctattagcccggccaacaagatattcccagaaagttccgactgtggggat
ttaagccacattacaccaaacgcatctaccagagagaagccgcacgaacatgtcagcttc
agcaaaaaagagcctgacgtggatgttgggggacagtacaaaaacaacatgcttgaaatc
gtggatgacagtgatgaggaggaggcaggcgcagttgaaaatgggcagacactgggtagg
gccatgctcaaggaggaggaacacactgtgccagaacagctgaaaagcaaggccagcttt
actgaggagtcgtcgcaaatgtccacaaccaccgtctccacacttggcatccctaaattt
aacatggacagcgacactgacatagaggcggaaccggttgaagaccagaggcctagcgca
gtgtgctttcacatggacagtgatacagatttggatgaagaggatgacacaactccacct
cccgtacaccccgacgggcctgtcagtcacatgtcagccgatgctaaaaaagttgatgcg
acccctccagtcccgctagatgacgtccagcttgacagcagcagagagctggacatggag
gctagcggcacatcctgtgatgcgacaccttccagactcaacttgattggggacatttcg
aaatcagatgacaaccaggcccccgttttcagtacacatgtgagtgtcagtgactcagcc
acgcaatcaaatgacagcagtgcggtgcgtgatcctcctcacttgtcacctgtcaccacc
gcaccctcctcggttactcctggtatcaccgcagcagctgctcagtcggtctctgatgca
gacaccaacatggatgagtccaatgtggcctctgctgaccaggacagtgatacagatctt
gaagaagagaagaatccaataattcttccagggataaaaccatcttgtttgaagggtcca
catctgcagcatacctctacccctgtgcaattatcaggtggattcaacagtccagtaaga
tcttcagccttgtttccatgctcaaacagccaggaggaagaggactttattgttgctgaa
acacagtcctttatccttcatactcaaggggaggtacaaagtgggatccatgatgccata
caagcctcagtgcatgaatcatcaatcaaggatatggaagagctgcctagccgaggagcg
tcttttcaattggggttgtctgacagcagccacctggagagtgcaggtcagtctctggct
gtggagcgcacccaggcctttggctctgtgactgaggctgatacccaagcatttgcagat
atttccagctcaggcacaggatcacttgggaaggatttaaacatggaggccacccaggcc
aaaaaggcatctgcaaggagtcttgtgttgtttgagggggagcagggaaatttggcttta
caagagacacagccttatatttcagagccttacagtgagtctgaagaagacccagaagaa
gatatagagacccaaccttttcccttgtccacctcttctacccttgctttggctgaaacc
aaactcatgactgcaattcaggaagacgagcacccaaatacaaacagtcctgtcgcccat
cttcaaccaaaccagattgctgaaggaacagatttgagtacttccagtttggctgataac
tgtcatcatactagtatcgctgcgacccaacctatagctaccaatgaagaaagttatgag
aacttaattccaatcttgcgtaatgagaaggtacatcttaataaaaagaatcaaccaaat
atgaattcctacaatttggctgctaatcatcagcctccgagtatagctgtaaccaagccc
atggctacaactaaaaatgaggaaattgataccaaaaacttgattgaagtcacatgcgaa
agtaaagtgccgctgaataaagagaggcaacccagtatgagtgcttgcgatttgcctgtt
gcaacccagcatatgaatatagctgccacacagcctttggctacaagtgagaatgaagaa
agcaatgatgaggatttgggtccagtcttttgtaaaagaaaattacagcatgataaagag
ccacaacccagatcaaatgcttacaatttagctactaatcatcagtctatgagtatagct
ccaacccagccaatggctgcaagtgaaagtgaagaaactgatgtagaagactcaattgga
gtacacgtggatacacgtaaagtgcagcttggtaaagagatgcaatccaaaagaagttct
aacgttatggccattacaccccttgctgttagtatacctgagacccagcctcttgctact
agtgcaaatgaggaaagcagtgaagaggacgactcaatgccagtcatgttccataaaaga
aaagcaaggccgcaacaaatcaatgaggactcacagtctctgagcagtactcttaaaatc
ccaaaggaacgttttaatgataaaagtcttttaaagtacagggatcaaggccaagggacc
agtagggagcctccatcagtaacttcaatacaaccagataaagagaagagtcagcctaat
catgacaccccgcctaagtatgacaaagataaatccactcttggtcaagagaaaatagag
actcagacagttgtgacttccaaagtctcttctgctgcaactcagctcgtggacacatct
gaagaggaagaagctgacagtgagatcttgatccctggcccaaggaaaagaaaagccaga
ccactgcaaattgaagacgagacacagccgcttgtatgttctcaagcagaggagactgag
acctcagtagttgaacgaaagccaatgagcactagtgaaccttccccacaggctctacaa
aatcagtctaaggtcagaaacagtaccacgaaacactcaagagaaatatcacaactcaga
gaaaaggaggaacgaatagtaaaaagacaagtgattggcaataaagccagaggaaggaca
gggaagtgtaggcctgctgggaccaagagtgaggacgaggccacgagacaccaaaccaac
atttttgaggtccaaaatagggagcgagaaagacgacaaaatgaaattactcagaaggaa
tcaaaagagagagaagaaccagaacagttgaaaggggcggaggaacaacaaggatgtgag
aaactggaaacagaacgcaaagatagaccgaaacaggatcgagcagacaaagagctccaa
caaagcaaagaagaaataccccaagcgacacagagaggccgaagggtatccagaagaaca
atcgctgttagccacactccagatcaagaggatgtcccagccaagaggaccagatcccgc
tccaactcctccaactctatcagctccgaggtgtccacttcaagcactcaagggagtaag
gggcgagggcaaggggtgaaaaggtccagcgggccttaccaggcacccatcacccggtgg
cggactgtagcagctggtctcacagaacaatcagagcaggggagttgcgaagcttcgccc
ccaggagtacttctgacatccacctcatccaattccattgctttggagaactcctgcaac
agcagccccatttctcagagagtaagaggaacaagacaaggaagaagaggagccaaaaca
gaatccgtgcccaattctatcacccctgccttcattcagaatcctgctcctcagcctaca
ccacgaggcaagaggggcaggaagccagacctgttaacaacaaagctttctgatgaagag
gaggagatgccagagtcaaaacaggcagctgccactagagggaggaggcgagcaaatgta
aaagaaccactgaacaactccgctgctgaatctcccctgccgaaaagaaatagcagggcc
agagttcagaagacggtaaaaagtgaaacctctgaaactcaaataggtccaccaacgagg
gatgaaagggaggtccaaggcaagagggaacgaaggaagagggtgttggaggcacatgtg
aaagatgagaatccaactccggtccaagcaaaaagaaaagctggtgcatcctgcactaag
gaaggcaggaatgctaaagaatctcctcctgccacagccatccaggatggaaatgcagaa
tctcttgttcctggtgaaaatgcacagacgacaatcagcagcaagaggaaaacgcgagat
tcttccgtgaattctcacagctcctcattactgagtcgtcgaccacaagatctcagcccc
tcttacaaggtgctgttcacgggggtggtggacgatgctggggaaagagtgctggcccgt
ttgggaggcactttggctaatggcatcggagacatgaactgccttgtgactgacaaggtg
cgcaggactgtcaagtttttgtgcgcggtggctaaaggaatccccattgtcaacacacac
tggctggccaagagtggtaaagccgggagctttctttctcctgatgtcttcatcgtgaaa
gatccagagcaggagaaacagtttggtttttgcctgcaggagtctctgaggcttgccaga
agccagcctctcttacagggctacgagatccacgtcaccaagtcggtgaagcccgagcca
gtctacatgaaggacatcatttcctgcagcggagccacctttctcctgaagatgccttct
tcacacaagcctcacaccatggtgatctcctgcacagaggactggccgctgtgccgtacg
gccgtctcggcgtcactcccggttgtctcagccgagtttatcctctctgggatcctgcag
caaaaactgaactttgaagcccacaagctgtccggcccgccgcaccaactgcagcctgcc
ggcggcagacgacagagcaggaggaagacgtag

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