Syngnathoides biaculeatus (alligator pipefish): 133500684
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Entry
133500684 CDS
T09681
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133500684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133500684
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133500684
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133500684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF7310
YlqD
Motif
Other DBs
NCBI-GeneID:
133500684
NCBI-ProteinID:
XP_061675690
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All DBs
Position
1:14033698..14052643
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AA seq
921 aa
AA seq
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MADKRKLQGEIERCLKKVAEGVEQFEDIWQKLHNAANANQKEKSEADLKKEIKKLQRLRD
QIKTWLASSEIKDKRQLAENRKLVETQMERFKAVERETKTKAYSKEGLGLAQKVDPAQKE
KEDVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKADKEKQDRIEDLKNFIEKHRFHI
RMLETVLRMLDNDSVQVDSVRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEDIRKETFA
WKKFPGPDADLVACFLGSAASLVASTPPGHSHPEDEIFQHSGSTPASTTSSSPVPPSPVP
PSPANCTAENSQDDKKRGRSTDGEVGRSPVKEGNPSPSSSSSSALTSSRLVSMATIVSGG
PANASPGSYSGATRQPPSQASHHQQGKASVTSSTSGTPAAQTAKSADTHLAPTSSSPPKS
DAPGFFASGTPSPGSKSPSLGNNAALASSMNAGLGLSGMPASLSTMTGLLSSSTPAPYAR
AAGASVAVGGPTSSAGELPGFGILGQTSTPSGLQGSSAVAQSQTGVVGSNGGSGSAAGLS
VGAPGRQKQNGPGSERLMFDNVGDSFPLGKKDTKQMFVFGVAAGYSAALTEFATDSSPSS
VSQSQSWQSLSLTSTANQLKDPAPSLLASITLSPSSFGEGKPGNSGAVLLNGPLSYPSPS
DGSKAQESLSSLKSTADRAVDGDVTSLHLNTEPFPIAPPPSSSAPSSSEASIPPSLGVCP
LGSSPLSKEQLYQRALEEAVWSHMPHPSDSERIRQYLMRNPCPALPFHHRAPPAHSDSLD
FYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDDFEQ
VQTKTKVWRPREGARCPPGPPPAPSRPPFSSSSQEVSDGSNEGINASIFLYISLFLIFVP
AHLTFSNRRSLSSVWSRPRTF
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaaaggaagctgcaaggtgaaatcgaaagatgtctgaagaaagtagcggaa
ggagtggagcagtttgaagacatctggcaaaagcttcacaatgcggccaacgccaaccag
aaggagaagtccgaagccgaccttaagaaggagatcaagaagctgcagcgacttcgggac
cagatcaagacgtggttggcgtccagcgagatcaaagacaagcggcagctggcggagaac
cgcaagctcgtcgaaacgcaaatggagcgtttcaaggccgtggagcgagaaaccaagacc
aaggcgtactccaaagagggtctgggtctggcccagaaagtggacccggcccagaaggag
aaggaggacgtcggcacgtggttgacgaacacgatagacacgctcaacatgcaggtggac
cagtttgagagcgaggtggagtccctgtcggtccagaccaggaaaaagaaagcagacaag
gagaagcaggaccgcatcgaggacttgaagaacttcatcgagaagcatcgcttccacatc
cggatgctggagaccgtcctgaggatgttggacaacgactcggtgcaggtggactccgtc
aggaagatcaaggatgacgtggagtactacctggactcgtcccaggatccggacttcgag
gagaacgagttcctgtacgacgacctcgacctggaggacattcgtaaggagacgttcgcg
tggaagaagtttccgggccctgacgctgatctcgtcgcttgcttcctcggttcagccgcg
tcgctggtggcctccaccccgcccgggcactcccacccggaggacgagatcttccaacac
tccggcagcacgcccgcctccacgacctcatcctcgcccgtcccgccctcgcccgtcccg
ccctcgcccgccaactgcactgcggagaactcgcaagacgacaagaagcgaggtcgctcg
accgacggggaagtcggccggtctcctgtgaaggaaggcaacccctccccctcctcctcc
tcctcttcagcgctgacttcttcccgcttggtctccatggcgaccatagttagcggcggc
ccggccaacgcgtcgcccggaagctacagcggagccacccggcagccgccctcccaggcg
tcgcaccatcagcagggcaaagcctcggtcacctcctccacgtcagggacgcccgcggca
cagaccgccaagtctgccgacacccaccttgccccgacttcctcgtcgccccccaaaagc
gacgccccgggattctttgcgtccggtacgccgtcgcccggctccaaaagtccgtcgcta
ggaaataacgccgccttggcgagcagcatgaatgccggactcggcctttcggggatgccg
gcgtccctgagcaccatgaccggccttctgtccagctccaccccggcgccgtacgcccgg
gccgccggggcgtcagtcgcggtcggcgggcccacatcctccgcaggcgaactgccgggc
tttgggattttgggtcagacgtccaccccgtcgggactgcaggggtcctcggcggtggcg
caaagtcaaacgggagtcgtcgggagcaacggcggctctggatccgccgccgggctctct
gtgggggcgcccggccgacagaagcaaaacggacccggcagcgagcgcctgatgtttgac
aacgttggagattctttcccgctcggcaaaaaggacacaaagcagatgtttgtgtttggt
gttgccgcaggttacagcgctgcgctgacagagttcgccacagactcctcccccagcagt
gtcagccaatcacaaagctggcaatccttgtcactgacctcaacagccaatcagcttaag
gacccagcccccagcttactggcctccatcacgttgtcgccgtcgtccttcggcgagggc
aagccggggaacagcggcgccgttctgctcaacggtccgctgtcctacccctcgccctca
gacggcagcaaggcccaggagtccctcagcagcctgaagtccacggcggaccgagccgtg
gacggcgacgtgacgtctctgcacctcaacacagaaccgttccccatcgcgccgcccccg
tcgtcgagcgccccgtcgtcctcggaggcgagcatcccgccctcgctgggcgtgtgcccc
ctggggtcctcgccgctgtccaaggagcagctgtaccagcgggccttggaggaggccgtg
tggagccacatgccgcacccgtccgactccgagaggatcaggcagtacttgatgaggaac
ccgtgccccgcgctgccgttccaccaccgggcgccgccggcccactcggactcgctggac
ttctaccagcggctctccacggagacgctcttctttatcttctactacctggagggcacg
aaggctcagtacctggcggccaaagcgctgaagaagcagtcgtggaggttccacaccaaa
tacatgatgtggttccagaggcacgaggagcccaaaaccatcacggacgacttcgagcag
gtgcaaacaaagacaaaagtttggaggccccgggaaggtgccaggtgcccaccggggccc
ccccccgccccatcccgtccgccgttttcctcctcgtctcaggaagtgtctgatggctca
aatgagggaataaacgccagcatttttttatatatatctttatttttgatttttgttcct
gctcatttgactttttcaaaccgccgcagcttatcctccgtttggagccgacctagaaca
ttttga
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