Syngnathoides biaculeatus (alligator pipefish): 133500981
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Entry
133500981 CDS
T09681
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133500981 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbia03021
]
133500981 (smarcc1a)
03036 Chromosome and associated proteins [BR:
sbia03036
]
133500981 (smarcc1a)
Transcription machinery [BR:
sbia03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133500981 (smarcc1a)
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133500981 (smarcc1a)
PBAF complex
133500981 (smarcc1a)
GBAF(ncBAF) complex
133500981 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
DUF919
Motif
Other DBs
NCBI-GeneID:
133500981
NCBI-ProteinID:
XP_061676292
LinkDB
All DBs
Position
5:complement(11284123..11309405)
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AA seq
1141 aa
AA seq
DB search
MATAATTASGPTTGPVGGGGGTAVVRKKDGGPSAKFWESSETVSQLETVRLWIGKHYKKH
VQNDSPTSKSLAGLVVQLLQFQEDSFGRKVNNPALTKLPAKCFLDMKAGGSLCHILGSVY
KFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDMEAKQASKLKD
AIKRHQGSITEDKSKATHLIFPTVSQQDEDEWLRPVMRKDKQVLVHWGHYPDSYDTWMAA
GEVDGDVEEPPSADRPWKVHARWVLDTDAFNEWMNEEDYEVDDNKKPVSFRQKIFPKEEE
SSSRTPDRKERKANSAVKKRRRSPSPPSTPAESRKKGGKKGSQGHYWKRRGHRGEEEDTE
DDVTKDLDDSSAGASIEEGSISKSAYSKKDSDSTPLKGDSGADVDDMEDDSVVSGGKEDE
DLNKAEIGRLMDTGEDNVTEQTHHIIIPSYSAWFDYNCIHEIERRALPEFFNGKNKSKSP
EIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSDSR
PLPMGPPPTPHFTVLADTPSGLMPLNHRPPAVRLRSGKQVEAVCCSVTFLCSHPSMLQIP
PSQQMANFPDKMKDKAIDLQNFGLRTDQYKKNSKGKSVVSSREWTEQETLLLLEALEMFK
DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLESSETSLGPLAYQPIPFSQSGNPVMSTV
AFLASVVDPRVASAAARAALEEFSRVREEVPAELVEAHVKKVQEAARTTGKVDPAFGLES
SGIAGTAPEEPEKTEATEGDKTETDTDSQQGDKAESKEEAEKPNESAEKRAKMEPTEKVK
KEAGEVLEQDDESEEGHDAKATPADKDEDESMETSSSEQEKDGKSTTEEGEEKRKKVEHD
IGEGNIATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETI
MDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQQMEQQAAAAAAAAAAAAQGQGHAP
GAGHHPGPAGMHPGGPPPHHVGPQPGAAMHPGYPAMGHHPMAPHHPGQTAPIVPGQPLPG
RMLGGPPTAGPPPGGMPPMMPPRHPGAPNGMYPGPASAQPEAVPPLPVGPPAPSGGRAAD
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgaccacggctagcgggccgaccaccggccccgtcggtggaggcggt
gggaccgcagtggtgcgcaagaaagacggtggcccatccgccaaattctgggagagttcc
gaaactgtatcccagctggagacagttcgactgtggatcgggaagcactacaagaagcac
gtccagaatgactcgcccactagcaagtccctagctggcctggttgtgcagctgcttcag
ttccaggaggactctttcggacgcaaagtcaacaatccagctctcaccaagctgccggcc
aaatgcttcctggacatgaaggcaggggggtctctctgccacatccttggctcggtctat
aagttcaagagtgagcagggctggcgccgctttgacctgcaaaatccttcccgcatggac
aggaatgtggagatgttcttgaacgtggagaagaacttggtgcagaacaactgcctgact
cgacccaccgtcttcttgtctcctgatatggaggccaagcaagctagtaagctcaaagac
gccattaaaaggcaccagggttcgatcactgaggacaagtccaaggccacacacctcatt
tttccgactgtatcgcagcaggacgaagatgagtggctgcgtcccgtcatgaggaaagac
aagcaggtgctggttcactggggtcactacccagacagctatgacacctggatggcagct
ggcgaggtggatggcgatgtggaggagccacccagcgccgaccgaccgtggaaggtccat
gccagatgggttctggacacggacgccttcaacgagtggatgaatgaggaagactacgag
gtggatgacaataagaagcccgtcagcttccgccagaagatcttcccgaaggaagaggag
tcgtcttcccgtacgcccgatcgcaaggagcgcaaggctaactccgccgtcaagaagagg
aggcgctctccctcccctcccagcacacctgctgagtcccggaagaagggcgggaagaag
ggaagccagggacattactggaagcggcgaggacatcggggcgaagaggaggacacggag
gacgacgtcaccaaggacctggacgactcgtctgctggtgctagcatcgaggaggggagc
atttctaagagtgcatattcaaagaaggattctgacagcacacctctaaaaggagacagt
ggagcagacgtggatgacatggaggatgactctgtggtctctggtgggaaggaggatgag
gacctgaacaaagcagagatcggccgtctgatggacacgggtgaggataacgtgacggag
cagacgcaccacatcatcatccctagctacagcgcctggttcgactacaactgcattcac
gagattgagaggagagccctacccgagtttttcaatgggaagaacaagtctaaatctcca
gagatatatctggcctaccgcaatttcatgatcgacacttaccgcctcaacccccaagag
tacctcacctccacctcctgccgcaggaacctgacaggggacgtatgcgccatcatgagg
gtccacgccttccttgagcagtggggcttggtgaactaccaggtggactcagacagcaga
cctctgcccatgggacccccgcccaccccacatttcaccgtgctggccgacacgccctct
ggcctcatgcccctcaatcacagacctccggcggtaaggttgcgaagtgggaaacaggtg
gaggcggtgtgttgcagcgtgacttttctttgctcgcatccttcaatgttgcagattcca
ccttcacagcagatggccaatttccctgacaagatgaaagacaaagccatcgacctccag
aattttggcctccgcaccgaccagtacaagaaaaactcaaagggtaaatcagtggtgtcc
tctcgagaatggaccgagcaagagactttgcttctgctggaggctcttgagatgttcaaa
gatgactggaacaaagtgtcggagcacgtgggctcgcgcacacaagacgagtgtattctg
cacttcctgcgcctccccatcgaggacccctaccttgagagctctgagacttcgctaggg
ccgctggcctaccagccaatccccttcagccagtctggaaaccccgtcatgagcacagtc
gccttcctggcttctgtggtggaccccagggttgcatccgccgccgccagggctgcgctg
gaagagttttcacgtgtgcgtgaagaggttcccgctgagctggttgaagctcacgtgaag
aaggtgcaggaggcagccaggaccactggcaaggtggaccctgcctttggactcgagagc
agcggcatcgccggcactgcccccgaagaacctgagaagacagaggccacagagggcgac
aagactgagacggacacagattcccagcagggggacaaggccgagtccaaggaagaggcg
gagaagcccaatgagtccgctgagaaaagggccaagatggagcctaccgagaaggtgaag
aaggaggccggggaggtgctggagcaagacgacgagagcgaagaagggcacgacgccaag
gccactcctgctgacaaagatgaagacgaatccatggagacgtcgtcgtcagaacaagag
aaggatgggaaatccaccacagaggaaggagaggagaagaggaaaaaggtggagcacgac
atcggagaaggaaacatcgccacagccgccgccgccgcgctggcctccgctgccaccaag
gccaagcacctggcggccgtggaggagaggaagatcaaatcactcgtggctttgctggtg
gagactcagatgaagaagctggagatcaagctgaggcactttgaggagctcgaaaccatc
atggatcgcgagaaggaggctttggagcttcagcgtcagcagctattgacagagcgtcaa
gcgttccacatggagcagctcaagtacgccgagatgaaggctcggcagcagatggagcag
caggcggcggcggcggcggctgccgctgccgccgctgctcagggccagggccacgccccc
ggagccggacaccaccccggaccggcaggtatgcatcccggtggcccgcctccccaccac
gtaggaccccaacctggcgctgccatgcaccccggttaccccgccatgggtcaccatccc
atggcgccccaccacccgggtcaaacagctcccatagtcccaggtcagccactgcctggg
cgcatgttgggcggaccccccactgccggacccccacctggtggcatgccccccatgatg
cccccacgccacccgggagcccccaacggcatgtacccaggcccagcgtctgcgcagcct
gaagccgtgcccccacttcctgttggccctccggcaccctctggtggccgtgcagcagac
aactga
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