Syngnathoides biaculeatus (alligator pipefish): 133501125
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Entry
133501125 CDS
T09681
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133501125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133501125
03036 Chromosome and associated proteins [BR:
sbia03036
]
133501125
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133501125
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133501125
mRNA degradation factors
5'-3' decay
Decapping complex
133501125
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133501125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
133501125
NCBI-ProteinID:
XP_061676591
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All DBs
Position
5:complement(30048793..30067133)
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AA seq
477 aa
AA seq
DB search
MARASNPARMIGLITATNGQLRGSKSAGFDGQQPQKRSNIPQSSGGIKYDLVWFGDDWKM
CLELPSKDNRIKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGR
DILARAKNGTGKSGAYLIPLLERIVIKKNHIQALVIVPTRELALQMSQISIQLSKHLGGV
KVMATTGGTNLRDDILRLDETVHVIIATPGRILDLMKKGLAKVDKIQMMVMDEADKLLSQ
DFVSIIEEIISFLPKKRQILLYSATFPISVQTFMNKHLQKPYEINLMEELTLKGITQYYA
YVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRN
RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRIGRSGRFGHLGLA
INLITSEDRHNLKSIEDQLVTDIKPIPGNIDKSLYVAEFHSVDPDDNGPANTKQGAA
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagcatcaaatccagcacggatgatcggcttgatcacagcaacaaacgggcag
ctcagagggagcaagtctgcaggattcgatggccagcagcctcagaagaggagcaatatt
cctcagagcagcggtggtataaagtatgatttggtttggtttggggatgattggaaaatg
tgcctggagcttccttcaaaagacaacagaataaaaacatcggatgttacagctaccaag
ggaaatgaatttgaagactactgcctcaagagggaacttctcatggggatctttgagatg
ggatgggagaagccctcacctatccaggaggaaagcatccccatcgccttgtcgggcaga
gatattttggcccgtgccaaaaacggaacaggcaaaagtggagcctacctcatccctctc
ctggagagaatagtcataaagaagaatcacattcaagccttagtcatagtgcccacgcga
gagttggccctgcagatgagccagatcagtattcagctcagcaagcaccttggaggagtg
aaggtcatggccaccactggcggcaccaatttgagggatgacatcttgcgcctcgacgag
acggtgcatgtcataattgccacacccggaagaatattggacctgatgaaaaagggtctg
gctaaagtcgacaagatacaaatgatggtgatggatgaggcagataagctcctctcacaa
gactttgtatccatcattgaagaaatcatcagtttcttaccaaaaaaacgtcagattcta
ctttactctgcgacgttccccatcagtgtgcagacattcatgaacaaacacctgcaaaag
ccttatgagattaaccttatggaggagctgacacttaagggaattactcagtattatgcg
tatgtgactgaaaggcagaaggtccactgtctcaatactctattttccagacttcagatc
aaccagtccatcatcttctgcaactccactcagcgggtggagctcttggccaagaagatt
acccagctgggctattcatgcttctacatccatgccaagatgatgcaagagtacaggaac
cgcgtcttccatgacttccgtaacggattgtgcagaaatctggtgtgcacagacctgttc
acgcggggaatcgatatccaggcggtcaatgtggtcatcaactttgactttcccaaaagt
gcagaaacatacttacatcgcataggaagatcagggcgcttcggtcacctgggtctggcc
atcaacctgatcacatcggaggatcgtcacaatctgaagagcatcgaggaccagttggtc
accgacatcaagcccatccctggcaacatcgacaagagcctgtatgtggcagagtttcac
tctgtggaccccgacgacaacggaccagcaaacacaaaacagggagcagcctga
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