Syngnathoides biaculeatus (alligator pipefish): 133502030
Help
Entry
133502030 CDS
T09681
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133502030 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbia03021
]
133502030 (sf3b3)
03041 Spliceosome [BR:
sbia03041
]
133502030 (sf3b3)
03036 Chromosome and associated proteins [BR:
sbia03036
]
133502030 (sf3b3)
Transcription machinery [BR:
sbia03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
133502030 (sf3b3)
Spliceosome [BR:
sbia03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133502030 (sf3b3)
Complex B
133502030 (sf3b3)
Complex C
U2 SnRNP specific factors
133502030 (sf3b3)
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
133502030 (sf3b3)
TFTC complex
133502030 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
133502030
NCBI-ProteinID:
XP_061678332
LinkDB
All DBs
Position
6:85639..127772
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKMQEIVVSRGKIIELLRPDANTGKVHTLLTMEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMFCQIADLANEDT
PQLYVACGRGPKSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIDDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVKMQGQDAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHQETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGSPKAGAGQWASLVRLVNPIQGATLDQVQLEQNEAAFSVAVCRFHNAG
DDWYVLVGVARDMILNPRSVGGGFIYTYRLTGGGEKLEFVHKTPVEDVPLAIAPFQGRAL
VGVGKLLRIYDMGKKKLLRKCENKHVPNLVTGIHTIGQRVVVSDVQESLFWVRYRRNENQ
LIIFADDTCPRWVTTACLLDYDTMASADKFGNITIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKADVIVNYHVGETILSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacatcacactacagcgtgccactggcatcacacatgccatccatgga
aacttctctggaaccaagatgcaggagattgttgtttccagaggaaagatcatagagttg
cttcggccagatgcaaacacaggaaaggtgcacacactgctaacaatggaagtgtttgga
attgtgcgttcactgatggccttcagactcacgggaggaaccaaagattacattgttgtt
ggaagtgacagcggccgtattgtcatcttggaataccatccatccaaaaacatgtttgag
aaaatccaccaggagacttttggaaagagtggttgtcgtcgcattgttccagggcagttt
ttggctgtggaccccaaaggcagagctgtcatgataggagccatagagaaacagaagttg
gtttatattctaaacagagatgcggcagcacgactgaccatctcatccccactggaggcc
cacaaagccaacacactggtctaccatgtcgtgggtgtggacgtcggctttgaaaatccc
atgttcgcttgtcttgaaatggactatgaggaagctgacaatgaccctaccggagaagct
gctgccaacacacaacagacactcactttctatgagctggaccttggcttaaaccacgtg
gtccgcaaatacagcgaggctttagaagaacatggaaactttctcatcactgttcctggt
ggttctgatgggccaagcggagttctgatctgctccgaaaactacatcacatataagaat
tttggagaccaacctgacattcgctgtcctatcccacgtcgtaggaatgacctggacgac
ccagagcgtggtatgatatttgtttgctcagcaactcacaagaccaagtccatgttcttc
ttcctagcgcaaactgagcagggagacatctttaaggttaccttggaaactgatgaagaa
atggtcacagaaatcagactgaagtattttgacacaatccctgtggcaacagccatgtgc
gtcttgaagactggcttcctgtttgtggcttcagaattcggaaatcattacctttaccag
attgcccacttgggcgacgacgacgaagagcccgagttctcctctgcaatgcctctggaa
gaaggtgacaccttcttcttccagccccgccccctcaaaaatctggtactggttgatgaa
caggaaaacctgtcacccatcatgttctgtcagattgctgatttggccaatgaagacaca
ccacagctttatgtggcctgtgggcgaggacccaaatctacattaagagttcttagacat
ggactggaggtttctgagatggctgtgtctgagcttcctggtaaccccaatgctgtgtgg
acagtacgtagacatatcgacgatgaatttgatgcctacatcattgtgtctttcgtcaac
gctacgctggttctgtccattggggagactgtggaggaggtcacagattctggatttctt
ggaacaacacccaccctctcctgctcgctgctgggtgaagatgccctagttcaggtgtat
cctgacgggatccgccatattagagcggacaagcgtgtgaatgagtggaagactcctggg
aaaaagactattgtccgttgtgctgttaatcagcggcaagtggttattgcactcacaggt
ggtgagctggtctactttgagatggacccgtcaggccagctaaatgaatatactgagcgc
aaggagatgtccgctgatgttgtctgcatgagtctggccaatgttcctcctggtgaacag
cgctctcggttcctggctgtgggactagttgacaacactgttcgaatcatatccctggac
ccttcggattgcttgcagccactgagtatgcaggctctcccagcccagccagaaagtctt
tgtattgttgaaatgggaggggttgagaaacaggatgaacttggagaaaaaggaaccatc
ggcttcctctaccttaacataggccttcagaatggtgtactgctaaggactgtgctggat
cctgtcaccggtgatctatcagataccagaacccgctatctgggctcacgacctgtcaaa
cttttcagagtcaagatgcagggacaggatgctgttcttgccatgtccagtcgctcgtgg
ctcagctactcgtatcagtctcgtttccatttgacgcctctgtcatatgagactctggag
tatgcgtcaggctttgcctctgaacagtgcccagaaggcatagtggccatctctaccaac
acacttagaattttggctttggagaaactaggagcagtcttcaaccaagtggcttttccc
ctgcagtacactcccaggaagtttgtgatccatcaagagacaaacaatttaattttgatt
gagactgaccataatgcctacactgaggcgaccaaagcgcaaaggaaacaacagatggct
gaggaaatggtggaggctgcaggtgaggatgaacgagaactggccgctgagatggcagct
gccttcctcaatgagaatcttccagaagccatttttggctcaccaaaagctggtgctggg
cagtgggcttctctggtgcgcctggtcaaccctatacagggtgcaacactagaccaggtg
cagttagagcagaatgaagctgcattcagtgttgcagtttgtcgtttccacaatgcaggg
gatgactggtatgttctggtgggagtggccagagacatgatcctcaaccctagatcagtt
gggggtggcttcatctacacttaccgcctaaccggtggtggggaaaagcttgagtttgtg
cataagactccagtcgaggatgtccccttggccatcgcaccatttcaggggcgagccttg
gtaggagttggaaaactcctgagaatttacgacatgggcaaaaagaaactgcttcgcaag
tgcgagaataagcatgttcccaatctggtgactggcatccacaccattggccagcgcgtg
gttgtctctgatgtacaggaaagtctcttctgggtccgctacaggcgtaacgagaaccag
ctcatcatattcgctgacgatacttgtcccagatgggtgacaacagcatgcctgctggac
tatgacaccatggcctctgcagacaagtttgggaacattaccattgtgcgtcttccaccc
aacactagtgatgatgtggatgaagatccaacaggcaacaaggccttatgggacagaggc
cttctcaacggagcatcacaaaaggctgacgtgatcgtcaactaccacgtgggggagacc
atcttgtccctgcagaaaaccacactgatccctggaggttcagagtcactggtctacacc
accctgtccggtggcatcggaattctggtcccatttacttctcatgaggaccatgacttc
ttccaacatttagagatgcacatgcgctcagagttcccgccactgtgcggaagagaccat
ctcagctttaggtcctactacttccccgtcaagaatgtgattgacggcgacctgtgtgag
caattcaacagcatggagcctcacaagcagaaaagtgtggcagaggagctggacaggaca
ccgcccgaggtctccaaaaaacttgaggacatccgcacacgttacgcattctaa
DBGET
integrated database retrieval system
