Syngnathoides biaculeatus (alligator pipefish): 133502038
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Entry
133502038 CDS
T09681
Symbol
utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
133502038 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sbia03009
]
133502038 (utp4)
Ribosome biogenesis [BR:
sbia03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
133502038 (utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_WDR5
WD40_Prp19
WD40
ANAPC4_WD40
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_RIG_2nd
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
EIF3I
Beta-prop_HPS5
Beta-prop_IFT140_1st
WD40_Gbeta
Beta-prop_SCAP
PROPPIN
Beta-prop_TEP1_2nd
Lactonase
Beta-prop_WDR75_1st
Ge1_WD40
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
133502038
NCBI-ProteinID:
XP_061678346
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Position
6:complement(7942634..7962909)
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AA seq
685 aa
AA seq
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MGEFKVHRVRFFDYMPSAVRAMAFNSRTERLAVARADRTVEVFNFTDNYFQEKVIPGRDG
AGIETLCWVGHRLFSAGLSGEITEYDLENLQPMSTVDAYGGPIWSISSNSKGTLLAVGCE
DGTVKIFEILEDRIQFQRNFDRQKSRIISLSWHPSGTQLAAGMVDMIRIFDAETGHSAHR
LLVERALGASKSREVVVWSVIFLSDHTIISGDSVGKVQLWDGITGTLIKSHSVTKWDVLA
LSVSQDESSLIAGTSEGTVVQFQFLPCVINKQDKDWVRTRTFKNHSHDVRALVHTDFSVV
SGGVDTQLVVRPLLDKVEKNTQESALRKIIFPHKSLVCCAKKSGLLLFQFSDHLELWRLG
ESDGNGRPGESLPLKRKPEKLIHLKRKGENHVWCSTLSPCGEWLAYSTVSRVCLYRLQIH
DNNIRITKVSKVPKILHLAQQLCFSSDSSKLFASCSHSSVIVVSLSQSECKYVCTFKPQP
GSRHPIHLLHPSDDGKWLVAANTGGEVHVYNLQKLKFHCTVPVYSSCPTALALHPTTSNL
IIVHADQQIFEFSLVQKEYTEWSRKLQKQGLHPLWVQRDTPITHITFNPKNSAHILLHDM
FMFCIIDKSLPLPEAKSQLSNQMTLRSLPESDRIRYSHSFKICKSFQPLLSLTLLEDQSI
VAVERPLRDIQSRLPAPVRQKKFAT
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagtttaaggtacaccgggttcgtttcttcgactacatgcccagcgctgtccga
gccatggcgttcaatagccgaacggaacgacttgctgtggcccgtgctgacagaactgtt
gaagtctttaacttcactgacaactacttccaagaaaaggtgatcccaggtcgggatggt
gcaggcatcgagactctctgctgggtgggtcaccgtctcttcagtgcaggtttgagtgga
gagatcacagagtatgacttggagaacttgcagcccatgtccacagtggatgcctatggt
gggccaatttggtccatcagtagcaacagcaagggaacattgctggcggttggatgtgaa
gatggcacggtgaagatatttgaaatactggaggacaggattcagtttcagaggaacttt
gacaggcagaaaagtcgtatcatcagtctttcttggcatccctctggtacacagctggcg
gctggcatggtggacatgattcgaatatttgatgctgagactggtcacagcgcacacaga
ttgcttgttgaaagggccctaggagcatccaagagcagggaggtggtggtttggagtgtc
atcttcttatctgatcacactatcatcagtggggattctgttggaaaggtccagttgtgg
gacggaatcaccggaacactcatcaagtctcactctgtcaccaagtgggatgttcttgcc
ctttctgtatcccaggatgagagcagccttatagccgggacatcagaaggcactgtggtc
cagttccagtttcttccttgcgtcatcaacaagcaagacaaggactgggtccgaaccaga
acctttaaaaaccattcgcatgacgtgagggcactggtccatactgacttttctgttgtt
tctggaggtgtggatacacagctggtagtacgacccctgctggacaaagtcgagaagaac
acccaagagtcagccctccgcaaaatcatcttcccacataagagtctggtgtgttgcgct
aagaagtcagggctgctgctcttccagttctctgatcatcttgagctgtggaggctaggg
gagagtgatgggaatggaaggcctggcgaaagtctacctctaaagaggaaaccagagaag
ctgattcatctgaagaggaagggtgaaaatcatgtttggtgtagtactctgtcgccatgt
ggagagtggctggcgtattcaacggtctccagggtttgtctttacaggctacagatccat
gacaacaacatcaggatcacaaaggtttctaaagtgcccaagatccttcacttagcccag
cagttgtgcttttcctccgattcctccaaactctttgcatcctgcagccactcatcagtc
attgtggtttccctcagccagtcagagtgcaaatacgtttgcacatttaaacctcagcca
ggttccagacatccaatccacctgttgcatccaagtgacgatggcaagtggctcgttgca
gccaacacaggcggtgaggtccatgtctacaacctccaaaagctgaagtttcactgcaca
gtgccagtgtacagctcctgtcctaccgccttggcacttcacccaaccaccagcaacctc
atcatagtgcacgcagaccagcagatatttgagttctctctagtgcaaaaggagtacacc
gagtggagtcgcaagctgcagaagcaagggctgcaccctctctgggtgcaaagggacacg
cccattactcacatcacgttcaacccaaagaactcagctcacattcttctgcacgatatg
tttatgttttgcatcatcgacaagagcctgccactcccagaagctaagtctcaactctcc
aatcagatgacacttcggagtctccccgagtctgacaggataagatacagccactcgttc
aagatttgcaaaagttttcagcccctcttgagtttgaccctgctggaggaccagtccata
gtcgcggtggagcgtcctctgcgtgacatccagtctcggctgcctgcacctgtacgacag
aagaagtttgccacataa
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