Syngnathoides biaculeatus (alligator pipefish): 133502073
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Entry
133502073 CDS
T09681
Name
(RefSeq) aggrecan core protein-like isoform X1
KO
K06792
aggrecan 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sbia00535
]
133502073
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133502073
04091 Lectins [BR:
sbia04091
]
133502073
Proteoglycans [BR:
sbia00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
133502073
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
133502073
Lectins [BR:
sbia04091
]
C-Type lectins
Lecticans
133502073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
UL45
Ig_3
I-set
PGDH_inter
Motif
Other DBs
NCBI-GeneID:
133502073
NCBI-ProteinID:
XP_061678436
LinkDB
All DBs
Position
6:23787018..23807968
Genome browser
AA seq
1494 aa
AA seq
DB search
MTSLLLLCASLGFVSATTSFQRHDGLDGTLRVSIPMEVPLRPLLGGKVLVPCYFQDNTAG
DPGAPTTAPLSHRIKWSFVTEENVTTILVASEGDVHVETEYLDRVTMVNYPLVSTDASLE
ITELRSKDSGSYRCEVMHGIEDNYDTVDIQVQGIVFHYRAITTRYTLTFEKAKAACIQNS
ATIATPAQLQAAYDDGYHQCDAGWLSDQTVRYPIHHPREECYGDKENFPGVRTYGVRDVN
ETYDVYCFAEKMPGRVFYSMSVEKFTFDEADDQCTKLGARLATTGELYLAWKGGMDVCNA
GWLGDRSVRYPINIARPQCGGGLLGVRTVYLFPNQTGYPIPSSRYDAICFQGSDDDGAVP
GRITPFPDIMSLTPAPGVYPGLTSRPGGQEIKHGGVEILAKPISPPFTDGAMAPSGVVFH
YRPITGRYTLTFPEAQQACKSIGAAIASPLQLQAAFEKGLHQCDAGWLGDQTVRYPIVSP
RDKCAGNLLHLPGVRSYGLRPNTERYDVFCYVEHMRGEVFFTSDYDSFSFEEALLHCEKL
NSTLATTGQLYAAWNQGLDKCRPGWLMDRSVRYPVTTPRSHCGGGQVGVHIIYAFPNQTG
FPDEHSRYDAYCYRAERPATETGGGTTIDTGSETTIDTDSETTIDTGSETTTDTDSETTT
DTDSETTTDTETIFDKLLTVDVISKTTVAVDHATPTIEPTVGYNDTEIGLNITEIEEVIQ
ETSITTQLTAPTLPVDGSASGSGDHSASGDISGESSTTSGSGDSGSGLDITFSGHTDIQS
GDLSASGEPQGAEGGSTIFTTGDSYSASGSGSVVSGSGSGFVVSGSGSGSGDSGNGADIV
INILDGKEKELSIPTVTEQELGSGVLWTSGMSGSGRMSGSGSMSGSGGMSGSGGMSGSGG
MSGSGSGFSGITFTDKSSIDATVQQSGEQELYGSTIMSGSGSTSASGSFSGSGVSGFSGI
TFTDKSSIDATVQQSGEQELYGSTIMSGSGSTSGSGSVSGSGISEFSGIIFTDNGAIDLT
VQQSGEQELYGSAEMSGSGSVSASGSLSGSGISGFSGISFTDNSGIDLTVQPSGEQELSG
YEPSASGSLSASGISGFSGISFTDNSGIDLTAQPSGEQELSGYEPFASGYPSGSPSGFPS
GTSGSGSASGQPSQTDSDIIFLTDDRIQEVTVSPQKHHPEEGRGVIEISGEESGSGIPLQ
VSGSDRTSTAGLSIAFPPGSTMTYPDYNEPSGHKEEEATVIVLTPDPGYVSPTTAPTISL
ATPPAVEQPEVEQAVHGCPEGWLEFMGSCYLHFADRHTWSDAEQRCQELNAHLVSIRSEE
EQLFLNSKGQDYEWIGLNDKEVQNEFHWTDGSALTYENWRPNQPDNYFNSGEDCVVMIGH
EGGQWNDVPCNYYLPFSCKTQPASCGAPPEVEHGSPMGVSRDRYAVNSKVRYQCQAGYTQ
RHLPVIRCTESGQWETPQVECLETADSRGNRLHRRSAKSRSRGAGSRRGHRKAL
NT seq
4485 nt
NT seq
+upstream
nt +downstream
nt
atgacttctctgcttctactgtgtgcgtctttgggcttcgtctcggcaacgacgtccttt
caacgccatgacggcttggatggcacactgcgtgtcagcattccaatggaggtgcctctg
cgccccctgctgggcggcaaggtgctggtgccctgctacttccaggacaacaccgccgga
gaccccggcgcaccgaccacggccccgctctcccaccgcatcaaatggagctttgtcacc
gaggagaacgttaccaccatccttgtggcgtcggagggcgacgtccacgtggagaccgag
tacctggacagagtaacaatggtcaactacccgctggtgtccacagatgccagcctggag
ataacggagctgaggtccaaagactcaggctcctaccgctgtgaggtgatgcatggcatc
gaggacaactacgacaccgtcgacatccaggttcagggtattgtgttccactaccgagcc
atcaccacccggtacacccttacctttgagaaggccaaagcggcttgcatccagaacagc
gccaccatcgccaccccagcccagctgcaggccgcctacgatgacggataccaccaatgt
gatgccggatggctgtctgatcagactgttaggtaccccattcatcatccccgagaggaa
tgctacggagacaaggaaaacttccccggcgtgagaacctatggagtgagagacgtaaat
gagacttacgacgtttactgttttgcggagaagatgccaggcagagtcttctactccatg
tcggtggagaagttcactttcgacgaagctgacgatcagtgcaccaaactgggcgccagg
ctcgccaccaccggagagctttacctggcctggaagggcggtatggatgtgtgcaacgcc
ggttggttgggcgaccggagcgtgcgttaccccatcaacattgccaggcctcagtgtgga
ggcgggctcctgggagtgagaacagtctacctgttccccaaccagacggggtaccccatc
ccgagctctcgttatgatgccatctgcttccaaggcagtgatgatgacggtgcagttccc
gggaggatcactcctttcccagacatcatgagcctgaccccagcacccggagtttaccca
ggcctcacaagccgccctgggggtcaggagatcaagcatggcggtgtggagattctcgcc
aagcccatctcacctccttttacagacggcgccatggctcccagcggtgtggtgttccac
taccgaccgattactggtcggtacactctcacctttccggaggcccaacaggcctgcaag
agtattggagcagccatcgccagccctttgcagctgcaggcggcctttgaaaaaggcctg
caccaatgtgacgctggctggttaggtgaccagactgttaggtatcccatcgtgtcaccc
cgagataaatgcgccggcaacctgctgcacctcccaggagtccgatcctacggtctgagg
ccaaacacagagcgttacgatgtgttttgttatgtcgaacatatgcgaggtgaggtcttc
ttcaccagtgactacgatagcttttccttcgaggaggccctactgcactgcgagaaactc
aacagtacactggcgacaaccgggcagctgtacgccgcatggaaccaaggcctcgacaag
tgccgccctgggtggttgatggaccgcagcgttcgatatcccgtcacgactcccagatcc
cactgcggcggaggtcaggtgggcgtccacatcatctatgccttccccaaccagacgggc
tttccagatgagcactcccgctacgacgcctattgttaccgagcggaacggcctgccact
gaaactggcggtggaaccaccattgacactggcagtgaaaccaccattgacaccgacagt
gaaaccaccattgacaccggcagtgaaaccaccactgacaccgacagtgaaaccaccact
gacaccgacagtgaaaccaccactgacaccgaaaccattttcgacaagttactgacagtg
gacgtcatcagcaagacaacggttgcagttgatcacgccactcccacaattgaacctacc
gtgggttacaatgacaccgaaataggtctaaacatcacagaaatagaggaggttatccag
gagacaagcatcacaactcagctaactgctcctactttgccggttgatgggtctgcctct
ggatcaggcgaccattcagctagcggggacatctcaggggagtccagcactaccagcgga
agtggagactctggttcaggactagacatcacttttagtggacacacagacatccagtca
ggagacctttcagcctctggcgagccacagggagcggagggtggcagcacaatattcacc
acaggagactcctatagtgcatcaggatctggatctgttgtatcaggatctggatctggt
tttgttgtatcaggatcgggttctggcagtggagacagtggcaatggagctgacattgtg
atcaatatactggatggaaaagagaaagaactgtcgatcccaaccgtcacagagcaggag
ttaggtagcggagtcttgtggacttctggtatgtccggatctggacgcatgtccggatca
ggaagcatgtccggatcaggaggcatgtctggatcaggaggcatgtctggatcaggaggc
atgtccgggtcaggcagtggattttctggtatcacctttacggacaaaagttccattgat
gcaacagttcaacaatcaggagagcaggagttgtatggttccactataatgtccggatca
ggatcgacatctgcatcaggctcgttctctgggtcaggcgtcagtggattttctggtatc
acctttacggacaaaagttccattgacgcaacagttcaacaatcaggagagcaggagttg
tatggttccactataatgtccggatcaggatctacatccggatcaggctctgtctctggg
tcaggcatcagtgaattttctggcatcatctttacggacaacggtgccattgacctaacg
gttcagcaatcgggagaacaggagttgtacggatctgctgaaatgtccggatcgggatct
gtgtctgcatcaggctctttgtctgggtcaggcatcagtggattttctggcatctccttt
acggacaacagcggcattgatttaacagtccagccatcaggagagcaggagttgtctgga
tatgaaccttctgcatcaggctctttgtctgcgtcaggcatcagtggattttctggcatc
tcctttacggacaacagcggcattgatttaacagcccagccatcaggagagcaggagttg
tctggatatgaaccctttgcatcaggctacccaagtggttctccaagtggatttccatct
ggtacttcaggcagtggttctgcctctggccaaccttcacagacagatagcgacatcatc
tttctaaccgatgacaggatacaggaagttaccgtttctccccagaagcaccatccagaa
gagggtcgtggcgttatagaaataagcggcgaggaaagtggttctggaatccctcttcag
gtatcaggcagtgacaggacgtcaactgctgggctttctatagcttttcctcctggatct
accatgacctacccagactacaatgagccatcagggcataaggaggaggaggctaccgtc
atcgttctgactccagaccccggctacgtcagcccaaccactgcaccgacgatctcactg
gcaacccctcctgctgtggaacagccagaagtagaacaggctgtgcatggttgtcccgag
ggctggttggagttcatgggaagctgttacctccacttcgctgacagacacacctggtca
gatgctgagcagcgttgccaggagctcaacgcccacctggtcagcatcagatctgaagag
gagcagctgtttctaaactccaaaggtcaggactatgagtggataggcctcaacgacaaa
gaagttcagaacgaattccattggacagatggcagtgctctgacatacgagaactggagg
cccaaccagccagataactacttcaactccggagaggactgcgtggtcatgatcgggcat
gaaggaggccagtggaacgacgttccttgcaactactaccttcccttctcatgcaagact
caacccgcgagttgcggcgcgccccctgaggtggagcacggctcaccgatgggcgtcagc
cgggatcgctacgctgtcaactccaaggtgcgctaccagtgtcaagcgggctacacgcag
cgccacctgcctgtcattcgctgtacggagagcggacagtgggagacgccgcaagtggaa
tgtctagaaacagccgacagccgcggcaacagactacacaggaggtcggcgaagagcaga
agtcgaggagccggcagccggcgggggcacaggaaagcgctttga
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