Syngnathoides biaculeatus (alligator pipefish): 133502253
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Entry
133502253 CDS
T09681
Symbol
cntn1a
Name
(RefSeq) contactin-1a isoform X1
KO
K06759
contactin 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
133502253 (cntn1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sbia04515
]
133502253 (cntn1a)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
sbia00537
]
133502253 (cntn1a)
Cell adhesion molecules [BR:
sbia04515
]
Immunoglobulin superfamily
Contactins
133502253 (cntn1a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
sbia00537
]
Others
133502253 (cntn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
C2-set_2
Pur_ac_phosph_N
C2-set_3
Motif
Other DBs
NCBI-GeneID:
133502253
NCBI-ProteinID:
XP_061678813
LinkDB
All DBs
Position
6:complement(27497612..27578111)
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AA seq
1216 aa
AA seq
DB search
MRLFSHAFICAFLIAAARGHSSRKAARARTAPPSQPTGGTSGTARLSLPLAVLGCQFLPR
LLPERPAARCRSRCERPSARRNGPPPCPPLLCAHQARPPRKENQAVPLMFHPLSVELKPL
PSGGCHVDIMPNLSLLLCLLLLLFGSPADTSAHEEQPDFFGVPLKKTSDNPPSFPEQIFS
LNLAPVSPAGASFFRRFQFEPSDEAAGYGPIFEEQPVDTIYPEESPEDKITMICRARASP
PATYKWILDGAEIDLSADRKHYALSEGNLVISEPVKNKHEGRYSCLAGNTHGTVVSREAS
VQFGYLDLFSSEERESVYVKEGQGAVLLCAPPPHHPADLSFRWILNEFPTFIPPDKRRFI
SQITGNLYISKVEASDSGNYSCIASSASISKSVFSNYIPLVPLTERAIRKYPADLNVKFP
DTTTLAGHNITLECFALGNPVPEIRWRKLNGELPPNHEVRMAGAHLHLYNVRSEDSGSYQ
CEAANSKGKDYHSAHLSVEAFPEWVEHISSAERDLGSAYTMSCLARGKPKPRIRWLKNGE
PLDGKEMVFRNLTFEDSGMYQCIAENPHGVIFANAELRVFDCAPTFERNPVKHVLAPRNG
RVVMECRPKAAPKPKVSWSKDTELLSNSSRPSEKALLRPDPPTTAESHTLRLRLFRMFIW
EDGSLEILNVTRTDEGRYTCFAHNNLGKANSTGSLTVTDSTKITLAPSNADVKVGENARM
QCGASHDSSLDIAFIWSLDGRVIDLDKDAQHYERTLNGSSDGELLIKNAQLKHAGIYSCT
AQTPVDNVTSSASLVVRGPPGAPAGLRVTDKSNKNVTLQWSRGADNHSPISKYTIQYRDG
FSRDVWKNAATSPADIEGNAETATVVDLVPWTEYEFRVIATNTLGTGTPSVPSLKEKTLA
SSPVVAPSDVGGGGGTNRELTITWTPVQEQYYYGPYFGYIVAFKPRAGVEWTQVTVSDPR
AGRYVHRDPSIAPATEFVVKIQAYNSKGEGPYSLPQTIFSAQDAITDAPGSIDGKALSAT
EAVLWWFPISQSNIDGYQVKYWRKQEDSEGGAHKVVVSGKENHTRVDGMKPDSLYLIEIR
GYNSAGYGPASERLEIHTKKPPPGQAPRIISKKLKGKSVNVAWEHVETLANEAPVDGYKV
LYRPQGQSTGTLYMTKWRHIELPLFENETYVVEVRAYTEGGDGAVSQIFITGGSATAARP
LSALGLLLVAVLCLNL
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgcgacttttttcacatgctttcatttgtgcatttttaatagcggccgcgagggggcac
tctagcagaaaagcggcacgggcgcgcaccgcgcctccctcccaacccaccggggggaca
agcgggaccgcgcggctctccctcccgctcgctgttcttgggtgtcagtttcttcctcgg
ctccttcccgagcggccggcggcgcgctgccggagcagatgtgagcgtccgagtgcgcga
cgaaacggaccccccccctgcccccccctcctgtgcgcgcaccaggctcgccctccgcgg
aaggagaaccaggcggtcccgctaatgttccatccgctgagcgtcgagctgaagcccctc
ccatcaggcggttgtcacgtggacatcatgccgaacctcagcctgctcctctgcctcctg
ctgttgctctttggctcccccgcagatacatctgcgcatgaggagcaacctgactttttt
ggagttccattaaagaaaacctccgacaatcctccctcgttcccagaacagattttctct
cttaatttggctcccgtcagccctgcgggtgcctcgtttttccggcgttttcaattcgaa
ccaagcgatgaagccgcaggttacgggccgatctttgaggagcagccggtggacaccatc
taccccgaggagtcgcccgaggacaaaatcaccatgatctgccgggcccgagcgagtcca
cctgccacatacaaatggatcctggacggtgcagaaatcgaccttagcgccgaccgcaaa
cactacgcattgtcggagggcaacctggtcatcagcgagcccgtcaaaaacaaacacgag
gggaggtattcctgcttggccggcaacacgcacggcacggtcgtcagtcgagaggcctcg
gtccagttcggatacttggaccttttctcatccgaggaaagggagtcggtatacgtgaaa
gaagggcagggggccgtgcttctctgcgctccccctccacatcatccggctgacctgtcg
ttccggtggatcctcaatgagttccccaccttcatcccgccggacaaaaggcgcttcatc
tcgcagataacgggcaacctttacatctccaaagtggaggcctcggacagcggcaactac
tcgtgcatcgcgtccagcgcctccatctccaagagcgttttctccaactacattccgctc
gtgcccctcaccgaacgtgccatcaggaagtacccggctgacctcaacgtgaagttccct
gacaccaccactctggcggggcacaacatcacgttggaatgctttgctttggggaacccc
gtcccggagatccgctggaggaaattgaacggagagctgccccccaaccatgaggtgcgc
atggcgggggctcacctccacttgtacaacgtgcggtcggaagacagcggctcgtatcag
tgcgaggcggccaactccaagggaaaggactaccacagtgcacatttgtctgtggaagct
tttcctgaatgggtggagcacatcagcagcgcagagagagacctcggcagcgcctacacc
atgtcctgcttggccaggggcaaacccaaaccacgcatccgctggctgaagaacggagag
ccgttggacggaaaagagatggtgttccgcaatctgacatttgaagactccgggatgtac
cagtgcatcgctgagaatccccacggggtcatctttgccaacgcggagctgcgagtgttt
gactgcgctcccaccttcgaacgcaacccggtcaagcacgtcctcgctccgagaaacggc
cgagtggtgatggagtgtcgacccaaggctgcccccaagcccaaagtctcgtggagcaag
gacaccgagctgctgtctaactccagcaggccatcagaaaaggccttgctcagacctgac
ccccccaccaccgccgagtcacatactctccggctccgtctcttcaggatgttcatctgg
gaggacggcagcttggagatcctcaacgtgacccgcacagacgagggcaggtacacctgc
ttcgcccacaacaacctgggcaaggccaacagcacgggctccctaacggtaacagattcc
acgaagatcaccttggccccctccaacgccgacgtcaaagtgggggaaaacgcccggatg
cagtgcggcgcgtcgcacgactcctcactggacatcgccttcatctggtccctggacggc
cgagtcatcgacctcgacaaggacgcccagcattacgaacgtaccctgaacgggagctca
gatggagagcttctgatcaagaacgcccagttgaagcacgccggcatttacagctgcaca
gcgcagacgcccgtggacaacgtgacctcctctgccagcctggttgtaagaggacccccc
ggcgctccggcagggctgcgagtgacagacaaaagtaacaagaacgtaacgctgcagtgg
agccggggagcggacaaccacagccccatctccaaatataccatccaatatcgggacggc
ttctcccgggacgtgtggaagaacgccgccacatctccagcggacattgaagggaacgca
gagacggccactgtggtggacttggtgccctggaccgagtacgagttcagggtgatcgcg
accaacacgctgggcacgggcaccccgagcgtcccatctctcaaagagaaaaccctggcc
tcaagtcctgtggtggcgccctcggatgttggcggaggcggcgggacaaacagggagctg
accatcacgtggacccctgtccaggagcagtactactacgggccttacttcggctacatc
gtggccttcaaacctcgagccggcgtcgagtggacacaggtgaccgtgtcggacccccga
gccggtcgctacgtgcacagagacccctccatcgctcccgcgacggagttcgtcgtgaaa
atccaagcgtacaacagcaaaggggagggaccctacagtctgccgcagaccattttttcc
gcgcaagacgccatcaccgatgctcccggaagcattgatggcaaagcgctctctgccacc
gaagctgttttatggtggtttcctatttcacagagcaacatagacgggtaccaggtgaag
tactggagaaaacaggaagacagcgaagggggtgcccacaaagtggtggtgtccggtaag
gaaaaccataccagagtggacggaatgaagcccgactccctttacctcattgagatccgg
ggctacaactctgcgggatacgggccggccagcgagcgcctcgagatccacaccaagaaa
ccgcctcctggtcaagcccctagaatcataagtaaaaagttgaagggcaagtcggtaaac
gtggcctgggaacacgtggagacgctggcaaacgaggcaccggtagatggttacaaagtg
ctgtacaggccccagggtcagtccacaggaacgctgtacatgaccaaatggcggcacatc
gagctccccctctttgaaaacgagacctacgtggtggaggtccgagcgtatacggagggc
ggcgacggagccgtgtcacaaatcttcattacggggggaagcgccacggccgcccggccc
ctcagcgctctcggccttctcctggtggccgttctctgcctgaacctctga
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