Syngnathoides biaculeatus (alligator pipefish): 133502341
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Entry
133502341 CDS
T09681
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sbia03009
]
133502341 (ighmbp2)
03012 Translation factors [BR:
sbia03012
]
133502341 (ighmbp2)
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133502341 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
133502341 (ighmbp2)
Ribosome biogenesis [BR:
sbia03009
]
Eukaryotic type
Other ribosome biogenesis factors
133502341 (ighmbp2)
Translation factors [BR:
sbia03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133502341 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
DEAD
Viral_helicase1
ResIII
Helicase_RecD
IstB_IS21
nSTAND3
UvrD-helicase
AAA_16
AAA_22
SLFN-g3_helicase
Flavi_DEAD
DnaB_C
PhoH
NPHP3_N
ATPase
AAA
AAA_28
Zot
AAA_31
AAA_25
UvrD_C_2
ABC_tran
SRP54
Motif
Other DBs
NCBI-GeneID:
133502341
NCBI-ProteinID:
XP_061679003
LinkDB
All DBs
Position
6:complement(2093674..2101811)
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AA seq
989 aa
AA seq
DB search
MAVENFVSTTLELLQEEREAEIEETRVWKENISHKELQNKGVCLLKLHIGSQSTGLYGRT
VIVLEPRKHLGFSSLPSNSFGPGDIVGLYDSGEFSGTSQISTGIVTRVSQASISVAFDNS
NDGLSFDTEALYSLLKLANDVTYNRMKRALHVLNGYKNGPSANLISVLFGEAKPSSHSQP
QDVKFFNSNLDDSQKEAVTFALSQRELAVIHGPPGTGKTTTVVEIILQAIKQGQKVLCCA
PSNVAVDNLVERLARCKAKILRLGHPARVLESIQKHSLDAILANSDSTNIITDIRREIDK
AFLGIKKKNEKGDRVNYRRELGELRKELKTREATAITQILKSADVVLSTNTGACDDGPLK
FLPAEHFDWVVIDECAQSLESSCWISLLRARKCILSGDYKQLPPTIKSHTAASKGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMDWASKEMYQGRLTAHSSVESHLLKDLPGVTCVE
ETRTALLLIDTSGCGLTEMEIAEEQSKGNQGEVDIVALHIKALTEAGVNAKDIAVIAPYN
LQVDLLRQKLSARHPDLEIKSVDGFQGREKDAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHVAIVCDTQTVQNHAFLKTLIHHVTECGEVRTAFEYLQDIVPQNYSRDHKDTKPCN
LTSQNVEGKKIKAVQKKTNGSNTKNSKKHDKTLKPCLSELAEEEKMKNRQSEIREMVENF
LKNLSQSELDFPPSFNSHDRLLVHQIAEELGLAHLSKGEGKDRYITVSKHLSSKPDQPTE
QETEEKEQESDKREGAAVYQEQDIPQPSSKESSQPPLDLKKLHLERMKREQQKRGEKAEQ
KKQQTILVVTKKSTAIKGKKRTKASACDIAASSSPGDDFDALISAVVKADSVCSFIKCKA
SVVTLGQLCLFCKRQYCLSHHIPEVHGCGEQAKIQARMRISKEGILYAGSGTKEKSMDPN
KKAYLHRKLDSKLKDMATQRKTKNKDKDG
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgaaaattttgtttctacgacattggagcttctgcaagaagagagggaagct
gaaatagaggaaaccagggtgtggaaagagaatatttcacacaaagagcttcaaaacaaa
ggagtgtgcctgcttaaacttcacataggaagccagtccactggcctctatggtcgaaca
gtaatagtcctagagccaagaaagcatcttggattctcatctcttcccagcaatagcttt
ggacctggggatatagttgggttatatgactccggtgaattcagtgggacatctcagatc
agcaccggcattgtgacacgagtcagccaggcctcaataagtgtggcttttgacaattca
aacgatgggctcagttttgatacggaggctttatacagcctcttaaagttggcaaatgac
gtgacttataatcgaatgaaaagggctttacatgtgttgaatggatacaaaaatggacca
tctgcaaatctgatcagtgttctctttggagaagccaaaccttcttctcattctcagcca
caggacgtcaaattctttaactccaacctggatgattctcagaaagaagcagtgactttt
gctctatctcagagagaactagcagtgattcatggtcctccaggcactgggaaaaccacc
actgtagtggagatcattcttcaagctatcaaacaaggccaaaaggtcttgtgctgtgcc
ccgtcaaatgtggcggtggataatttggttgagagattagcccggtgtaaggccaaaatt
ctgaggcttggtcacccagccagagtgctggagtctatacaaaagcattcactggatgcc
atcctcgctaacagtgacagtaccaacatcatcactgacatacgcagagaaattgacaaa
gcttttctgggaataaaaaagaaaaatgaaaaaggagaccgcgtgaactacaggagggaa
ctaggcgaactaagaaaagagctgaaaaccagggaagcaacggccatcacccagattctt
aaaagcgccgatgttgtcctatcaaccaatacaggtgcatgtgacgacgggcctctaaaa
ttcctgccagcggagcattttgattgggtggtgattgatgagtgcgctcagtcactggag
agcagctgctggattagcctgctccgagcacgcaagtgcattctgtccggagactacaag
cagttaccgcctaccattaaatcacacacggcagcttcaaaaggcttgtctcttagtcta
atggagagactcatccagatgtacggagactcagttgtgcgaatgctcacagtccagtac
cgcatgaacagtgccatcatggactgggcgtccaaagagatgtaccaaggaagactgacg
gcacacagctcagtggaatcacacttgttgaaagatctgcctggggtcacctgtgtcgaa
gaaaccaggacagctcttcttctcatcgatacatctggctgcggtctgacagaaatggag
atcgcagaagagcaatccaaaggcaaccaaggtgaggtggacatcgtagctctgcacatt
aaagccttgactgaggctggggtgaatgccaaagacatagctgttattgcgccgtacaat
ttgcaagttgaccttttgcgtcagaaactttctgcaaggcatccagatctggaaatcaag
tcagtggatggctttcaaggcagagagaaagacgctgtggttttgtctttagtccgctcc
aatagaaaaggtgaagtcggatttctggcggaggacagaaggataaacgtggctgtgaca
cgtgcgagacgtcacgtcgccatcgtgtgtgacacccagactgttcaaaatcatgctttc
cttaagactctgatccatcatgtcaccgaatgtggggaggtacggacagcatttgagtac
ctacaagacattgtcccacagaattacagtcgtgaccacaaagacacaaagccttgcaat
ttgacctcacaaaatgttgagggaaagaaaataaaagcggttcagaagaaaacaaatgga
agtaacacaaaaaatagtaaaaaacacgacaaaactctaaagccatgtttgtcggagctc
gctgaggaggaaaagatgaagaaccgacaaagtgaaatcagagagatggtggaaaacttt
ctgaagaacctcagtcagagtgaactagattttccaccgtcattcaactctcatgaccgc
ttgttggtgcaccagatcgctgaagagctgggccttgcgcacctgagtaaaggcgagggg
aaagacaggtatatcaccgtctccaagcatctgagttcaaaaccagatcagccaacagaa
caagagactgaggaaaaggagcaggaaagcgacaaacgtgagggagctgcagtttatcaa
gaacaggacattcctcaaccatcctcaaaagaatcaagtcaacctccattagatcttaaa
aaattacatttggagcgaatgaagagggaacaacagaaaaggggagaaaaggctgaacaa
aagaagcagcagaccattttggttgttacaaagaagtccacagccattaaaggaaagaag
cgaacaaaagcaagtgcatgcgacatcgcggcatcctcttctccaggcgacgactttgac
gccctcatcagtgccgtggtgaaggcagacagtgtatgcagttttatcaagtgtaaagcc
tccgtggtaactcttggacagctttgtcttttctgcaaaaggcaatattgtctcagtcac
cacataccagaggttcatggctgtggagagcaagcaaagattcaggctcgaatgagaata
agcaaggagggaattctttacgccggtagcgggacgaaagaaaaatccatggaccccaac
aagaaagcttatctacacagaaaactggactctaaacttaaagatatggcaacacagagg
aaaacaaaaaacaaagacaaggatggttaa
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