Syngnathoides biaculeatus (alligator pipefish): 133503015
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Entry
133503015 CDS
T09681
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
133503015 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbia03021
]
133503015 (polr1b)
Enzymes [BR:
sbia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
133503015 (polr1b)
Transcription machinery [BR:
sbia03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
133503015 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
Motif
Other DBs
NCBI-GeneID:
133503015
NCBI-ProteinID:
XP_061680071
LinkDB
All DBs
Position
7:10977491..10991850
Genome browser
AA seq
1134 aa
AA seq
DB search
MEASDEWADVAQVPTLKNLTDGRFGELNDSQCRAVQDLVKAHVDSFDQAVGDGIGRVVQA
IPPLEFSLKGERISLAFVEAAVNPPAVSRGNVCREMRVFPAECRARRCTYRGKLVADVSW
AVDGVPQGIIKQSLGQLPVMVKSRVCNLRGMTPRQLVRHHEEAEEMGGYFIINGMEKVIR
MLVMPRRNYPVAMSRSKWKSRGQGYTQYGVSIRCVKEDHTVVNMNLHYLENGTVMLNFIY
QKELFFLPLGFALKALVDMSDFEMFCELIKGVEENSLYRSCACEMLRLVAERGCTSRAQV
LDYLGQRFRVKMNLPEWYSHQECADFLLDQCVCIHLRTGLEKFRLLCLMTRKLFSFAKQE
SLEENPDGVACQEVLTPGQLYLMFLKERMSAWLVSVKLAFEKRGSRLRGRWTAESVMKML
DLGNDLTKPFEYLLATGNLSSKSGLGLLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTASCQVVTRSLPTVTLPALLCSLGVA
PADAAPSRPYADCYPVLLDGAVVGWVEAEMAPGLVDSLRRFKVLQEKKVPPWTEIVLVPK
TGKASLYPGLFLFTTPCRLVRPVRNLALGQPELIGTMEQLYADVAVTEAEVRPGVSTHRE
LFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHAFLERSDNKLYRLQTPQSP
LVRPAMYDRYRLDDYPSGTNAVVAVISYTGYDMEDAMIVNKSSWERGFAHGCIYKTEMVD
LALRARGQDSVVFGAKPGDPKVNGRLDPDGLPPVGAVLRYGDPYYSYQNLNTGQAFVTFY
KSHEACVVDNVKICSNDAGSGSFKRACITVRVPRNPTVGDKFASRHGQKGILSRLWPAED
MPFSESGVSPDILFNPHGFPSRMTIGMLIESMAGKSGALHGRGHDATPFAFSEDDSALDY
FGEMLRAGGYNYYGTERLYSGTSGLELEADIFVGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNIQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLL
ERPPPAWSSTRHRRTVCALCGKSDSVESVSVPYVFRYFVAELAAMNIKVRLDVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggaggcctcggacgagtgggccgacgtggctcaagttcccacgctcaagaacttgacc
gacggacgcttcggcgagctcaacgacagccagtgtcgagccgtgcaggatttggtcaaa
gctcacgtggactctttcgaccaggccgtcggcgatggaatcggacgcgtcgtgcaggca
atcccgccgctggagttctcgctgaagggcgagcgcatcagcctggcgttcgtggaggcc
gccgtcaacccgcccgccgtctccaggggcaacgtgtgccgcgagatgagggtcttcccg
gccgaatgtcgcgcccggcgctgcacgtacaggggcaagttggtggcggacgtgagctgg
gcggtggacggcgtcccccaaggcatcatcaagcagtcgctgggacaacttcccgtcatg
gtcaagtcccgcgtgtgcaacctgcgcgggatgacgccgcggcagctcgtgcgccaccac
gaggaggccgaggaaatgggcggctacttcatcatcaacggcatggagaaggtgatccgc
atgctggtcatgccgcggaggaactaccccgtcgccatgtctcggtccaagtggaagagt
cgaggccaaggctacacgcagtatggtgtgtcgatacgctgcgtgaaggaggatcacacc
gtggtgaacatgaaccttcactacctggaaaacggaaccgtcatgctcaacttcatctac
cagaaggaactcttctttcttccgctgggcttcgcgctgaaggctctggtggatatgagc
gacttcgagatgttctgtgagctgatcaaaggcgtggaggagaactcgctgtaccgcagc
tgcgcctgcgagatgctgcgcctggtggcggagcgcggctgcacgtcgcgcgcccaagtc
ctggactacctgggccagcgcttccgggttaagatgaacctgcccgagtggtacagccac
caggagtgcgccgacttcctgctggaccagtgcgtctgcatccacctgaggacgggcctg
gagaagttccggctcctgtgcctgatgacccgcaagctgttcagcttcgccaagcaggag
agcctggaggagaacccggacggcgtggcctgccaggaggtcctcacgccgggtcagctc
tacctcatgttcctcaaggagaggatgtcggcgtggctcgtgtccgtcaagttggcgttc
gaaaagcgcggaagtcgcctgaggggcagatggacggcggaaagcgtcatgaagatgttg
gacctgggcaacgacctcaccaagcccttcgagtacctgctggccaccgggaacctcagc
tccaagtccggtctgggcctgctgcagaacacgggtctgtgcgtggtggccgacaagctc
aacttcatccgttacctgtcgcacttccgctgcgtgcaccgcggcgccgccttcgccaag
atgcgcaccaccacggtgcgcaagctgctgcccgagtcgtggggcttcctgtgcccggtg
cacacgcccgacggtgaaccctgcggcctcatgaaccacatgacggccagctgccaggtg
gtcacgcgctcgctgcccaccgtgacgctgcccgccctgctctgctcgctgggcgtcgcc
cccgccgacgccgccccctcccggccctatgccgactgctaccccgtcctcctggacggc
gccgtggtgggctgggtggaggccgagatggcgcccgggctggtggactcgctgcgcagg
ttcaaggtcctgcaggagaagaaggtccctccctggaccgagatcgtcctggtgcccaag
acgggaaaagcgagcttgtacccgggccttttcctgttcaccacgccgtgccgcttggtg
cgccccgtgcgcaacctggcgctgggccagccggagctgatcggaaccatggagcagttg
tacgccgacgtggccgtgacggaggccgaggtgcgcccgggggtcagcacccaccgggag
ctcttcccgcacagcatgctcagcgtagtggccaacttcataccttactcggaccacaat
cagagccccaggaacatgtaccagtgccagatgggtaagcagacgatgggattccctctc
cacgccttcctggagcgctcggacaacaaactctaccggctgcagaccccgcagagcccc
ctggtgcggccggccatgtacgaccgctaccggctggacgactacccgagcggcaccaac
gccgtggtggccgtcatctcctacaccggctacgacatggaggacgccatgatcgtgaac
aagtcgtcgtgggagcgcggcttcgcccacggctgcatctacaagacggaaatggtggac
ctggccctcagggcgcggggccaggacagcgtggtgttcggggccaagccgggtgacccc
aaggtcaacgggcgactggaccccgacgggcttcctccggtgggcgccgtcctgcgctac
ggcgacccctactacagctaccaaaacctgaacaccggccaggccttcgtcaccttctac
aagagccacgaggcctgcgtggtggacaacgtcaagatctgcagcaacgacgccggctcg
ggctccttcaagcgcgcgtgcatcacggtgcgagtgccgcgcaaccccaccgtcggcgac
aagttcgccagccgccacggccagaagggcatcctgagccgcctgtggcccgccgaggac
atgccgttcagcgagagcggcgtcagccccgacatcctgttcaacccgcacggcttcccg
tcgcgcatgaccatcggcatgctcatcgagagcatggcgggcaagtcgggcgccctgcac
ggccgcggccacgacgccacgcccttcgccttctccgaggacgactcggcgctggactac
ttcggcgagatgctgagggccggcggctacaactactacggcaccgagcgcctctacagc
ggcaccagcggcctggagctggaggccgacatcttcgtcggcgtggtttactaccagcgg
ctgaggcacatggtgtccgacaagttccaggttcggacgacgggggcgcgcgacaaggtg
accaaccagccggtgggcggccgcaacatccaaggcggcatccgcttcggcgagatggag
cgcgacgccctcctggcacacggctcgtccttcctgctgcacgaccgcctcttcaactgt
tcggaccgctcggtggcgcaggtctgcgtggactgcggcagtctgctgtcgccgctgctg
gagcggccgccgcccgcctggtcgtccacgcgccaccgccgcaccgtctgcgcgctctgc
ggcaagagcgactcggtggagtcggtgtccgtgccgtacgtcttccgctactttgtggcc
gagctcgccgccatgaacatcaaagtcaggttggacgtcaagtga
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