Syngnathoides biaculeatus (alligator pipefish): 133503202
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Entry
133503202 CDS
T09681
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03013
Nucleocytoplasmic transport
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133503202
03015 mRNA surveillance pathway
133503202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133503202
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133503202
5.6.2.5 RNA 5'-3' helicase
133503202
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133503202
mRNA cycle factors
Common to processing body (P body) and stress granule
133503202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
133503202
NCBI-ProteinID:
XP_061680524
LinkDB
All DBs
Position
7:17494242..17515859
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGHTQSQLESQVNG
PDEGLHNGGVEDSVAKASQLLAELNFEEDEEDAYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKATSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNTVGRPSNMYFQTHDQIGMIGAGPGHMA
AMNLPIPFNLVMPPMPPPSYLGQTNGPAAARGAMKGNKSGRGGRQRPRGSATQGVGHGLN
SQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcatacgggccaagctcccagaccctcacctttttggacaccgaggaa
accgagttgctcggagcggacacccagggctccgaatacgacttcaccgacttcaccctt
ccgagccagactcagacccaggggcacacccagagccagctggaaagccaggtaaacggt
cccgatgaagggctccacaacggtggggtcgaagattctgtggctaaagccagtcagttg
ttggcggaactcaattttgaggaggatgaagaagacgcctactacacgaaggacctgccc
gtgcacgcttgcagctattgtggcattcatgatccagcctgtgtggtttactgcaacacc
agcaaaaagtggttttgtaatggacgtggaaatacatctggcagccacatagtaaatcat
ttggtacgagccaaatgcaaagaagtgacacttcacaaagatggacctttgggagaaact
gtgctggagtgttacaactgcgggtgtcgcaatgtcttcctactgggtttcatccctgcc
aaggctgattctgtagtggtgctcctttgtagacagccttgtgccagccagagtagcctg
aaagacatcaactgggatagctcccagtggcagccgctgatccaagatcgctgttttctc
tcatggctggtgaagatcccgtcggagcaggagcagttgcgtgcccggcagatcactgcc
cagcagatcaacaagctggaggaactctggaaggacaaccccactgccaccttggaggac
ttggagaaacctggtgtggatgaagagccccaacatgtgttgctgcgctatgaagatgcc
taccagtaccaaaacatttttggtcctttggtcaaactggaggcagactacgacaagaag
ctcaaggagtctcagacccaagataatataacagtaaggtgggacttgggactgaataag
aagcggattgcatatttcactctgccgaagacagattcaggtgatatgcgcttaatgcaa
ggtgatgagatctgcctgcgctacaaaggagacctagcgccactgtggaaagggattggc
catgtcatcaaagttccagacaactatggggatgaaattgctattgaactgaggagtagt
gttggagcccctgtggaaattccacataacttccaggtggactttgtgtggaaggctact
tcctttgacaggatgcagagtgctctgaagacctttgctgtggatgaaacctctgtgtca
ggctatatttaccacaaactgctggggcacgaggtggaagatgttaccatcaagtgtcag
ctgcccaagcgcttcactgcccagggcctacctgatctcaatcactcacaggtgtatgct
gtgaagacggtgctacagagacctctcagtcttatccagggtcctcctggtactggcaag
actgttacctctgccactattgtctatcacctttcacgtcaaggcaacggaccagtcctt
gtgtgcgctcccagtaacattgcagtggaccagttaaccgagaagattgacaagactggg
cttaaggtggtcaggctgtgtgctaaaagccgtgaggctattgagtcaccagtgtctttt
ctggcattgcataaccagatcagcaatatggacagcatgccagaacttcagaaacttcag
cagctaaaggatgagactggtgagctctcttctgccgacgagaagcgctaccgagccctg
aaacgcactgctgagagggagctgctcatgaatgcagatgtgatctgctgcacctgcgtt
ggcgcaggagaccctcgcctggccaagatgcagtttcgctccatcctgattgatgagagc
acacaggccaccgagccagagtgtatggtgcctgttgttcttggagcaaagcagcttatc
ctggtgggggaccactgccaacttggtcctgtggtgatgtgcaagaaggcggccaaggca
gggttgtctcagtcgctttttgagcgcttggtggttctaggtatccggccaattcgcctt
caggtccaataccgaatgcatccagcgctcagtgctttcccatcaaacatcttttatgag
ggctccttgcaaaatggcgtcacggcagctgaccgcatcaagaaaggctttgacttccag
tggccacagccagacaaacccatgttcttttatgtgactcaaggccaggaagaaattgct
agctctggaacctcctacctgaataggactgaggctgcaaatgtagagaaaatcaccact
aggctgttgaaggcaggtgctaaacctgaccagattggaatcatcaccccatatgagggt
cagcgttcctacctggtccaatatatgcagttcagtggatctctgcacactaaactctat
cagcaagtggaaatcgcaagtgtggatgccttccagggcagagagaaagacttcatcatc
ctatcatgtgttcgtgccaacgagcatcagggcatcggtttcttgaatgatccacgtcga
cttaatgtggctttgaccagagccaaatatggagtgatcattgtggggaaccccaaggcc
ctttctaagcagcctttatggaacaacctgctgaacaactacaaggagcagaaggtcctc
gtggagggacccctcaacaacctgagggagagcctgatgcagttcagcaagccacgcaag
ctggtcaacaccataaatcctggcggacgtttcatgagcactgcaatgtacgatgcccgt
gaagctctcattcctggttcagcctatgaccgcagcaatactgttggtcgcccgtccaac
atgtatttccaaactcatgaccaaatcggaatgattggagcgggccctggtcacatggct
gcaatgaatctcccaattcccttcaacctggtgatgcctcccatgcctccgcccagttac
ttaggccagactaatggccccgctgcagcccgtggagcaatgaaggggaataagtcagga
cgtggtgggcgccagaggccccgtggctcagcaacccaaggtgttggtcacggactaaac
agccaagccagccaggacggggcgtcccagtccttctcacaggggccactgactcaaggc
tacatctcaatgagtcagccttcccagatgagccagcctggtctctcccagccagaactg
tcccaggacagttacttgggtgatgagttcaagtcccaaatcgacgtggctttgtctcag
gactcgacttaccagggtgaacgtgcataccagcatggtggggtgaccggcctgtcacag
tactag
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integrated database retrieval system
