Syngnathoides biaculeatus (alligator pipefish): 133504043
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Entry
133504043 CDS
T09681
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133504043 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
133504043 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133504043 (lsm4)
03041 Spliceosome [BR:
sbia03041
]
133504043 (lsm4)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133504043 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
133504043 (lsm4)
Spliceosome [BR:
sbia03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133504043 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
133504043
NCBI-ProteinID:
XP_061682162
LinkDB
All DBs
Position
7:complement(17469576..17474971)
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AA seq
142 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQHNKQQAKGRGGVGRGVFGGRGRGMSG
PGRGQQQPDKKAGKPQGMKNQH
NT seq
429 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttgtccctgctgaaaactgcccagaaccatccaatgctggtggagctaaaa
aatggcgagacgtacaatggccacctggtcagctgtgacaactggatgaacatcaatttg
agagaagttatttgcacctctcgggatggtgacaagttctggcggatgcccgagtgctac
atccgagggagcaccattaagtatctgcgaatcccggacgagatcatcgacatggtgaag
gaagaggtggtgtcgaagggtcgcgggcggggtggcgcccagcataacaaacagcaggcc
aaaggaagaggaggagtgggccgaggtgtgtttggcggtcgaggcagaggaatgagcggt
cccggaaggggtcagcagcagccggataagaaagcaggcaaaccacagggcatgaagaac
cagcactga
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integrated database retrieval system
