Syngnathoides biaculeatus (alligator pipefish): 133504348
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Entry
133504348 CDS
T09681
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133504348 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133504348 (dhx36)
03012 Translation factors [BR:
sbia03012
]
133504348 (dhx36)
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133504348 (dhx36)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133504348 (dhx36)
Translation factors [BR:
sbia03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133504348 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
NB-ARC
ATPase
AAA_19
NPHP3_N
AAA_16
Nop14
Motif
Other DBs
NCBI-GeneID:
133504348
NCBI-ProteinID:
XP_061682485
LinkDB
All DBs
Position
8:22991608..23019015
Genome browser
AA seq
1096 aa
AA seq
DB search
MSYKYGGGGGGRGRRGGSSRGFRDGSRERAGRGSSFSGSFDRDNDDGRHPSHLKGREIGL
WYARYGAVRKKQADRRSRAIVQMDEAREQHIIKLLDSVQNDKPSLERPSGNARGFASAVS
RRAPPNKSGHCYFDGDMTEEEKQKIKLEEGTTTHKKRSISQAVAKDEIPDRWDDGDDDDA
ADDDANADADNDADDDANADGDNDADDMVELQQLDDEEDREKMRRNDKDLEFLLQEIARD
VSLDESLKRDLQSKKSHPKYKEMLTFREKLPSYGKKEELVRLINSNQVLVVSGETGCGKT
TQVTQFILDDHINRGMGSVCRVVCTQPRRISAISVAERVAAERAEKVGSGNSCGYQIRLQ
SQLPRKQGSVLYCTTGIILQWLRSDPLLSSVSHLVLDEIHERSLHSDVLLTIVKDLLDVR
HDLKVILMSATLNAEKFSKYFDNCPMIHIPGLTFPVEEFLLEDVVEMTRHRPKNQVRRPA
FKRGFWQGHHSRPEKEEKEAEYKESWPCYARTLQARYSEDTIAALEILDGDDKIDLDLIV
ALIRHIVLNEEEGAILVFLPGWDNISSLNDLLMGQQMFRSDRFVIIPLHSLMPTVNQTQV
FKRPPSGVRKIVIATNIAETSITIDDVVFVIDGGKIKETNFDTNNNISTMTAEWVSLANA
KQRKGRAGRVCPGKCYHLYNGLRASLLDAYQLPEIMRTPLEELCLQIKILQLGGIAHFLQ
KALDPPTEKAVNLAIKNLKDLNALDHSENLTALGFHLARLPVEPHIGKLILFGALLGCLD
PVLTIAASLSFKDPFFIPLGKEDIADKRRKTLSRNSKSDHITVVNAFQGWQEAKQRGGRS
EREFCWDNFLSANTLQMLHNMKGQFAEHLMHAGFVSSKDPKDPNSNVNSDNERLIKAVIV
AGLYPKVAMIRPSHSKKRPGVKVYTQHDGKVCIHPKSVNYEETNFNYKWLIYHLKMRTSN
IFLYDCTEVSPFSLLFFGGDITIQKDEDQETIAVDQWIVFRSPARTAHLVKSLKQELHSL
LADKIRRPAPVDWKNRQSKDCAVITAIIDLITTQETTTATTPTMPRARGAGRDHDRAWNP
RGQHIYFNDDDSDDDN
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgagttataagtacggaggtggaggtggtggacgaggcagaagaggcggtagtagtaga
ggctttcgtgatggcagcagagaaagagccggccggggaagtagtttcagtggcagcttc
gaccgggacaacgacgatggtcgccatccatcccacttgaaaggtcgtgagattggcttg
tggtacgcaaggtacggagccgtgcggaagaaacaggctgaccggagatcgcgggcaatt
gtccagatggatgaggccagagagcagcacattattaagctgctcgactccgtccagaat
gacaagccgagtctggagagaccaagtggaaatgcgagaggttttgcgtcggcggtcagc
cggcgtgcacctcccaataagagtggtcactgctattttgatggagacatgaccgaagag
gaaaaacagaagatcaaacttgaggaaggcacaacaacacacaagaaacgttccatttca
caggcagttgcaaaagatgaaattcctgacagatgggatgatggtgatgatgatgatgct
gctgatgatgatgctaatgctgatgccgataatgatgctgatgatgatgctaatgctgat
ggcgataatgatgctgatgatatggtggagctgcagcaactggacgacgaagaagatcga
gagaaaatgaggaggaatgacaaagatctggagttcttactccaggaaatagcaagagat
gtttcgctggatgaatcactgaagagagatctgcagagtaagaaatcacacccaaagtac
aaggagatgctgactttcagagaaaagttgccatcctatgggaagaaagaggagctggtg
cggctgatcaactccaaccaagtgctggtggttagtggcgaaacaggctgcggaaaaacc
acacaggtgacgcagttcatcctggacgaccacatcaaccgcggtatgggctcagtgtgc
cgtgtggtttgcacacagccccggcgcatcagcgccatctcggtagcagagcgtgtggcc
gccgagagggcagaaaaggttggcagtggaaattcgtgtggttatcaaattcgattgcag
agccagttaccacggaaacaaggttcggttctgtactgtaccacaggcattatccttcag
tggctccgctcagacccgctgttatcaagtgtcagccacttggttctggatgagatccac
gagagaagcctgcactctgacgtgttactcaccatcgtcaaggacctgcttgacgtgcga
catgacctcaaggtcatcctgatgagtgccacgctcaacgcggagaaattctccaagtac
ttcgacaactgccctatgatccacatcccaggcttgacattcccagtggaggaattcctt
ctcgaggacgttgtggagatgacaaggcatcgtcccaagaaccaggtccgccggcctgca
tttaaaaggggcttctggcagggacaccactccagacctgagaaggaagagaaggaggcc
gaatacaaagagagctggccttgttatgctcgcacacttcaagccagatactctgaagac
accatagctgctcttgagatcctggatggtgatgacaaaattgacttggacctcatcgtg
gcgctcatccgccatattgtgctcaacgaagaggaaggagccatcctggtcttcctgcct
ggctgggacaacatcagcagcctcaatgacttgctgatgggacagcagatgttcagatca
gatcgttttgttatcatcccactgcactcgctcatgccgacggttaatcagacgcaggta
ttcaaacggcctccatctggtgtgcgaaagattgtgattgctaccaatatagctgagacc
agcatcaccatagatgatgttgtttttgtaatcgatggaggaaagatcaaagaaactaat
tttgacacaaacaacaacatcagcaccatgaccgccgagtgggtgagcctggccaacgcc
aagcagaggaaagggcgcgcaggcagagtgtgtccaggaaagtgctatcatctgtacaat
ggcctccgagccagtcttctggatgcttaccaattaccagaaatcatgaggactccgctg
gaggagctgtgcctgcagatcaagatattgcaacttggaggcattgctcacttcctgcag
aaggctctggacccgcccactgaaaaggctgtgaatctggccataaaaaacctcaaagac
ctgaatgctttggaccattcggagaacctgactgcgctgggtttccacttggctcgactg
cccgtggagcctcacattggaaagctcatcttgttcggagcgctgctaggctgcctcgac
cccgtgctcaccatcgctgcctccctcagcttcaaagaccctttcttcatacccctggga
aaagaggatattgcagacaagaggaggaaaacgctgtccaggaactccaaaagtgatcac
attactgtggtcaatgccttccagggctggcaggaagctaaacagcgtggcggtcggtcc
gagcgggagttctgctgggacaacttcctgtctgccaacacactccagatgctgcacaac
atgaagggccagtttgctgaacatctcatgcacgcaggctttgtcagcagcaaggaccct
aaagaccctaactctaatgtcaactcagacaacgagagattgatcaaagcagtgatcgtc
gctggcctgtaccctaaagtagccatgatccgaccgtcgcacagcaaaaaaagacctggg
gtgaaagtgtacactcagcatgacgggaaggtgtgtatccaccccaagtccgtcaactac
gaggagaccaacttcaactataagtggctcatctatcacctcaaaatgagaaccagcaac
atcttcctgtacgactgcaccgaagtctcccccttctctctgctcttctttggtggcgac
atcaccatccagaaggatgaggaccaggagactatcgctgtggaccagtggattgtcttt
aggtcaccggcgcgcactgctcatctagtcaaaagtctaaaacaagagctgcattctctg
ctggcggacaagatccgcagaccggcacctgtggactggaaaaaccgccaatccaaagac
tgcgcagtcatcacagccatcatcgacctcatcaccacgcaggagacgacgacagcgacg
actccgaccatgccgagagcgaggggcgccggcagagaccacgacagggcatggaacccc
agaggacaacacatttacttcaatgacgacgacagtgacgatgacaattag
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