Syngnathoides biaculeatus (alligator pipefish): 133504395
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Entry
133504395 CDS
T09681
Symbol
robo1
Name
(RefSeq) roundabout homolog 1
KO
K06753
roundabout, axon guidance receptor 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
133504395 (robo1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sbia04515
]
133504395 (robo1)
Cell adhesion molecules [BR:
sbia04515
]
Immunoglobulin superfamily
ROBO family
133504395 (robo1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
Ig_VEGFR-1-like_5th
C2-set_2
Ig_5
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Unc5_NetrinR_N
Ig_PDGFR_d4
DUF7908
Motif
Other DBs
NCBI-GeneID:
133504395
NCBI-ProteinID:
XP_061682569
LinkDB
All DBs
Position
8:15732515..15971020
Genome browser
AA seq
1707 aa
AA seq
DB search
MVINKSWCTLAGFREFSYEGPGGTFRSMPWDDVKVSGSMPGAPSGATPALLAMVVVLKLV
SCQDASVVAETGMAQDGGREGPTAAPTTGHGDDNSLGYTGSRLRQEDTPPRIVEHPSDLI
VSKGEPATLNCKAEGRPLPTVEWYKDGERVETDRDDPRSHRMLLPSGSLFFLRIVHGRRS
KPDEGSYVCVARNYLGEAVSHNASLEVAILRDDFRQNPADVIVAAGEPAVLECQPPRGHP
EPTISWKKDGLNIDDRDERVTIRGGKLMITNSRKSDAGKYVCVGTNMVGERESEIAELTV
LERPSFVRRPGSQVVLVDQSVEFRCEARGDPVPTVRWRKDDGDLPKARYEIREDHTLNIR
RLTSADVGSYTCVAENMVGKAEASASLTVHAPPAFAVRPRNQVVGVGRTVTFQCEATGNP
PPAIFWQREGSQNLMFSSQPPQPSSRFSVSQTGDLTITGAERSDVGYYSCQAINIAGSVI
TKALLEVTDVVSDRPPPVIRQGPTNQTVAVDGTVVLSCMASGNPTILWRKDGVLVSTHDS
RVKQLDTGALQIRYAKLSDSGYYTCIASTPGGEASWKAHLQVQEFGVPVQPNRPTDPNLI
PSAPSKPEVTDVTRTSVTLSWKPNLNAGATPTSYVIEAFSHASGSSWQTLAEHVKTESFV
LRALKPSAVYLFLVRAANAYGLSDPSPITEAVKTQDILPTSQGVDHRQIQRELGEVVIHL
HNPTILSSSSVRVQWTVEQQSQYIQGYKVMYRPSPEGQPRSDWATFEVRTPGEDSAVVPQ
LRKGVTYEFKVRPFFNEFQGSDSDVKIARTLEEVPSAPPREVTVTESGENGTAIMVSWQP
PPEEERNGVVQEYKIWCLGNESRYHINRTVDATTFSVLIPSLVPGVRYGVEVAASTGAGP
GVKSDITYFQLDASGRMTVAADPQNPLSQQISDVVKQPAFIAGIGTACWIILLVFSIWLY
RHRKKRNGLSSNYAGIRKVPSFTFTPTVAYQRGGEGVSSAGRPGLLNMGESATQPWLADT
WPNSCSNHNNCSINCCAAGNGNSDSNLATYSRPADCIANYNSQMDNKQGALLVPEPGVYG
DVDLSNKINEMKTFNSPNLKDGRFAGAGGQPTPYATTQLIQSSIMSNNDRGTAGGGGELN
DKHGWKPSGAILQPKQEMQYSIMEQNKLNKDRYRGGDAPMMPATIPYNHSHDSHTGGSYN
SSDRGSSSTSGSQGHKKGMRTPKVPKQSTMNWADLLPPPPPPANPPPSRNVEDYSLSMEE
SCDPDMQCSVPPSHMYLQPGELEEMEEEDEMERGPTPPVRGTASSPAAVSYSHQSTATLT
PSPQEEMTPMLHEAPDGHERRRHAVSPPPLSPSHTYGYIASPLDGMEEDDEEEIPEEDED
EDTDADVAKMHYHHTHPNAHPHHAQTHSRRLLLRGIEQTPASSMGDLESSVTGSMINGWG
SASEEDNVSSGRSSAVSSSDGSFFTDADFAQAVAAAAEYSGLRVAKHPGMQAQEAAALSA
RKYQINPSGRRPSSPVSTDGSMSMAAVHRRPPKKQKQHPAAGNQRREAYSEDLPPPPIPP
PAVLKSPTHPSKVGLEGRPVVSSKAGEARDNKRGAAGAGGYRPKESSDPRTSSSERREAQ
ERQKVHGGKGGHRGRQQAGAEDIQPYSRPQFPVVNSPRDPSSSSSVSSRGSGGRRRGDAG
HRNAADVGLGTLAAFQTGNEELEMAES
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggtgattaataagagctggtgcacgctggctgggtttagagaattcagctacgagggc
ccgggtgggacattcagatcgatgccgtgggatgacgtcaaagtgagcggcagcatgccc
ggcgcgccctcgggggccacgcccgccctgctcgcgatggtcgttgtcctcaagctggtg
tcctgtcaggacgcttccgtagtagcagagacgggaatggcgcaggacggggggagagag
ggtccgacggcggctcccaccacgggacacggcgacgacaactctttgggctacacagga
tcgcgtctacggcaagaagacacgccaccccgcatcgtggagcatccatccgacctaatc
gtatccaaaggcgagccggccaccctcaactgtaaggcggagggccggcccttgcccacc
gtggagtggtacaaggacggcgagcgggtggaaacggatcgggacgacccgcgctcgcac
cgcatgctgctgcccagcggctcgctcttcttcctgcgcatcgtgcacgggcggcggagc
aagccggacgaaggctcctatgtctgcgttgcccgtaactaccttggagaggcggtgagc
cacaacgcctcgctggaagtagccatcctgcgcgacgacttcagacagaaccccgccgac
gtgatcgtggcagccggagagccagcggtcctggagtgccaaccgccccgcggtcacccg
gaacccaccatctcttggaaaaaagacggcctgaacatcgacgaccgggatgaaagagtc
acgatacgcggcgggaagctgatgatcaccaactcgaggaaaagcgacgccgggaagtac
gtctgcgtagggaccaacatggtcggcgaaagggagagcgaaatcgccgaactcaccgtc
ttggagcgacccagcttcgtgcgtcgacccggcagccaggttgtgctggtggaccaaagc
gtggagttccggtgcgaggcgcgtggcgacccggtccccacggtgcgctggcggaaggac
gacggcgacctgcccaaagcgaggtacgagatccgggaggaccacaccctgaatatccgc
cgtctgacctcggcggacgtcggctcctacacatgcgtggcagagaacatggtgggcaag
gcggaagcgtctgccagcctcaccgttcacgcaccgccggcgtttgcggtgagaccgagg
aaccaagtggtgggcgtcggcaggaccgtcaccttccagtgcgaggccacagggaaccct
ccaccagccattttttggcaacgggaaggaagtcagaacctgatgttctcctcccaaccg
ccccaaccgtccagccgcttctccgtatcccagacgggagacctgaccatcacgggcgcc
gagcgttccgacgtgggctactacagctgccaggccatcaacatcgccggaagcgtcatc
accaaggcgctgctggaggtcaccgacgtagtgtcagaccgcccgcccccggtcatccgg
caaggcccgaccaatcagacagtggcggtggacggaacggtggtcctcagttgcatggcg
tcgggcaatccgaccatcctgtggagaaaggacggcgtgctggtatccacccacgactcg
cgggtcaagcagttggacacgggcgctctgcagatacgctacgccaagctgagcgactcg
gggtactacacctgcatcgcctccactcccggcggcgaggcctcgtggaaagctcatctg
caagtccaagagtttggagtccctgtccagccgaacagacccaccgaccccaacttgatc
ccgagcgccccctccaaacccgaagtcacggacgtcacccgcacttcggtcacgctctcc
tggaagcccaacctgaacgccggggccacacccacctcctacgtcatcgaagccttcagc
catgcgtcgggcagcagctggcagacgctagcagagcacgtgaagaccgagtcctttgta
ctgagggccttgaagcccagcgccgtctacctcttcctggtgagggctgccaacgcctac
ggactcagcgaccccagtccgatcaccgaagctgtgaaaacgcaagacatcctcccaacc
agccagggcgtggatcaccggcagatccagagggagctgggcgaggtggtcatccacctg
cacaaccccaccatcctgtcctcatcctccgtcagggtgcagtggacggtggagcaacag
tcccagtacatccagggctacaaggtaatgtacaggccatcaccagaggggcagccgcgc
agtgactgggccacgttcgaagtgcgtacgccgggcgaggacagcgcagtggtgccacag
ctccgcaagggcgtcacgtacgagttcaaagtgcggcccttcttcaacgaattccagggc
agcgacagcgacgtgaaaatcgccaggaccctcgaagaagtgcccagcgcgcctccccgc
gaagttacggtgacggagagcggcgaaaacggaaccgccatcatggtctcctggcaaccg
ccgccggaggaggagcgcaacggggtggtccaggagtacaagatttggtgcttggggaac
gagagcaggtaccacatcaaccgcaccgtggacgccaccaccttttccgtgctcatcccc
agtctggttccgggggtccgctacggcgtggaggtggcggccagcaccggggcgggcccc
ggggtcaagagcgacatcacctacttccaactcgacgcatccgggcggatgacggtggcg
gcggacccccaaaacccgctatcgcagcagatctcagacgtggtgaagcagcccgccttc
atcgccggcatcggcaccgcctgctggatcatcctgctggtcttcagcatctggctgtac
cgccacaggaagaagcgcaacgggctctccagcaactacgccggcatacgcaaggtgcct
tctttcaccttcacgccaacagtggcgtaccagagaggtggcgaaggagtgagcagtgca
ggaaggccgggcctcctcaacatgggcgagtcggccacgcagccctggctggccgacacg
tggcccaactcgtgctccaaccacaacaactgcagcattaactgctgcgccgccggcaac
ggcaacagcgacagcaacctggccacgtacagccggcccgccgactgcatcgccaattac
aacagccagatggacaataagcagggcgccctcctggtgcccgagccgggggtgtacggc
gacgtggacctgtccaacaagatcaacgaaatgaagaccttcaacagccccaacctgaag
gacggccgcttcgcgggcgccggcggccagcccacgccgtacgccaccacgcagctcatc
cagtcgtccatcatgagcaacaacgaccgagggacggcgggtggcggaggggagctgaat
gacaaacatggctggaagccctccggcgccatcctgcagcccaaacaggaaatgcagtac
agcatcatggagcaaaacaagctgaacaaggatcgctacagaggcggcgacgcccccatg
atgccggccaccatcccgtacaaccacagccacgacagccacaccgggggctcctacaac
agctcagaccgaggcagcagcagcacctccggcagccagggtcacaagaagggaatgcgc
acccccaaagtgccgaaacagagcacaatgaattgggctgacctcctgccgcccccgccc
ccgcccgccaacccgcccccgtcgcgcaacgtcgaggactactccctgtcaatggaagaa
agctgcgacccagacatgcagtgctccgtgccgccctctcacatgtacctgcagcccggc
gagttggaggagatggaggaggaggacgagatggagagggggcccacccctcccgtccgc
ggcacggcctcctcccccgccgccgtgtcttacagccaccagtccaccgccacgctcacg
ccctcgccgcaggaggagatgacgcccatgttgcacgaggcgcccgacggccacgagcgc
aggcgccatgctgtgagccccccgcccctctcaccctcacacacgtacggctacatcgcc
agccccctggatggcatggaggaggacgacgaagaggagatacccgaggaagacgaggat
gaggacacagacgccgacgtggccaagatgcactaccaccacacccaccccaacgcgcac
ccccaccacgcccagacgcactcgcgccgactgttgctgcggggcatcgagcagacgccg
gcgtccagcatgggcgacctggagagctccgtgacgggctccatgatcaacgggtggggc
tccgcctccgaggaagataatgtctcctcggggaggtccagcgccgtcagctcgtcggac
ggttccttcttcacggacgccgattttgcgcaggccgtcgcggctgccgcggagtactcg
ggcctccgggtggccaaacatcccggaatgcaagcccaggaagctgcagcgctgtcggcg
cgaaaataccaaatcaacccgtcggggcgccgtcccagcagcccggtgtccacggacggg
agcatgagtatggcggcggtgcacaggaggcccccgaagaagcagaagcaacacccagcc
gcagggaaccagagacgtgaagcctacagtgaagatcttccgccgccgcccatcccccct
ccggcggtgctcaagtcccccacgcatccctccaaggtgggcctggagggccggccggtg
gtctcctccaaagcgggagaggcgagggacaacaagagaggggcggcaggagcgggtggc
taccgacccaaagaaagctcggaccccaggaccagctcgtcggaacgcagggaggcccag
gagagacaaaaagtgcacgggggcaaaggcggccacagggggcgccaacaagcaggcgcc
gaggacattcagccctacagccgaccgcagtttccggtggtcaacagcccgagagacccg
agctcgtccagctcggtgtcctccaggggctcgggggggcgacggagaggcgacgcgggc
cacaggaacgccgccgacgtgggcctcggcaccctggcggctttccagacaggaaatgaa
gagctcgagatggcggaaagctga
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integrated database retrieval system
