Syngnathoides biaculeatus (alligator pipefish): 133504738
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Entry
133504738 CDS
T09681
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133504738 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbia03041
]
133504738 (prpf8)
Spliceosome [BR:
sbia03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
133504738 (prpf8)
Complex C
U5 SnRNP specific factors
133504738 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
133504738
NCBI-ProteinID:
XP_061683273
LinkDB
All DBs
Position
8:8497777..8516002
Genome browser
AA seq
2339 aa
AA seq
DB search
MAVAFPFRGVPAGIPPPGVPLPPQVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGFVDA
QKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDV
PVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPL
DYADNILDVEPLEAIQMELDTEEDSPVVEWLYEHQPLKDTTKFVNGTTYRRWQFSLPMMS
TLYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEF
NDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLI
NPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDNTANGIALLWAPRPFNLRSG
RTRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSF
KATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERK
KSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKY
KLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLL
ARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSES
WRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNL
GRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDT
KLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGI
EFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWC
QGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVV
INYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQD
TATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPR
DARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRI
LPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTF
TKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVF
YTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWE
SEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGW
RVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFP
TWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLD
LTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHP
RKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDI
ERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGSKPLIQQAMAKIMKA
NPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEG
NLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEE
QPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVL
FNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEW
IKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQ
SQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDD
IKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQT
VHLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITC
SFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQ
VSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7020 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgcgttccctttccgcggcgttcctgcggggatcccaccgccaggtgtcccc
cttccaccgcaagtcccagactacatgaccgaggagaaactccaagaaaaagcgaggaaa
tggcagcagttgcaagcaaagcgctactcggagaagcgaaagtttggttttgtggatgct
cagaaggaagacatgcctcctgaacatgtccgtaagatcatcagagaccatggtgacatg
accaataggaagtttcggcatgacaagagggtctacttaggtgccctcaagtacatgccc
cacgcggtgcttaaactgctggagaacatgccgatgccttgggagcagatcagagatgtg
cccgtgctctaccacatcactggagccatttcttttgtgaatgaaataccttgggttatc
gagccagtttacatcgcccagtggggtaccatgtggatcatgatgcggcgagagaagcgc
gaccgtcgccacttcaagaggatgcgcttcccgccgtttgacgacgaagagccgccgctg
gattatgcagacaacatcctcgatgtagaaccgctggaggccattcaaatggagctggac
acggaagaggatagtcctgtcgtggaatggctgtacgagcaccagccccttaaggacacc
acaaagtttgtgaacggcaccacttatcgtcgatggcaattctcgctccccatgatgtca
acgctgtaccgcttggccaatcagctgctgacagacttggtggattacaactacttctac
ctgttcgacctcaaggccttcttcacttccaaggctttaaacatggccatacccggagga
cccaaatttgagcctctggttcgagacattaacctccaggatgaagactggaatgaattc
aatgacatcaacaagatcatcatcagacagcccatcaggacagagtacaaaattgccttc
ccctacttgtacaacaacttgccgcaccatgtccacctcacctggtaccacacaccaaat
gtggtgttcatcaagactgaggacccggatctcccggcgttttactttgatccgctgatc
aatcccatttcacacagacattcggtcaagagtcaggagcctctgcccgatgatgacgag
gagtttgagctccccgagtttgtggagcccttcctcaaggagacgccactctacactgac
aacacggccaatggaattgctctgctgtgggcgcccagacccttcaacttgcgttcaggt
cgaaccaggagagccatcgatatccctctcatcaagaactggtatcgtgaacactgccct
gcaggacagccagtgaaagtgcgagtgtcataccagaaactgctgaagtactacgtgctc
aatgctctcaaacacagaccaccaaaggcccagaaaaagaggtatctgttccgttccttc
aaggccacaaagttcttccagtccaccaagcttgactgggtggaggtgggcctgcaggtc
tgccgacagggttacaacatgctcaatctgctcatccaccgaaagaacctcaactacctg
cacttggactacaacttcaacttgaagcccgtcaagacactgacaacaaaggaacgtaaa
aagtcaagatttggcaacgctttccacctctgtcgagaggtgttgagactcagcaagctg
gtggtggacagccacgtacagtacagattgggaaatgtggacgcattccagttggcagat
gggctgcaatacatctttgctcacgtgggacagctgactggaatgtaccgctacaagtac
aagctaatgagacaaatccggatgtgcaaagatctgaaacatctcatatactaccgtttc
aacactggtccagttggaaagggaccaggttgtgggttttgggcacctggatggagggtg
tggcttttcttcatgagaggcatcacaccacttttggagaggtggcttggaaatctgctg
gccaggcaatttgaaggccgtcactccaagggtgtggccaaaactgtgaccaagcagcgc
gtggagtctcactttgacctggagttgcgtgccgccgtgatgcacgacatcttggacatg
atgcccgagggcatcaaacagaacaaagccagaaccatccttcagcacctcagtgagtcc
tggaggtgctggaaggccaacattccgtggaaggttcccggtttaccaacgcccatcgag
aacatgatcttgcgctacgtgaaggccaaagctgactggtggaccaacacagcccactac
aaccgtgagcgaatccgccgtggagccactgtagacaagactgtctgcaaaaagaacttg
ggaagactgacccgtttgtacctcaaggctgagcaggagagacagcataactatttgaag
gatggtccctacatcacagctgaggaagctgtcgctatttacaccacaactgttcactgg
ctggaaagtcgacgtttctcgcccatccccttccctccactctcatacaaacatgacacc
aagttgctcatcctggcgctggagaggctcaaagaggcttacagtgtaaaatcccgcttg
aatcagtctcagagagaagagctcgggctgatcgagcaggcttacgacaacccccacgag
gctctgtccaggatcaagcgtcacctgctcacacagcgagccttcaaagaggtgggtatt
gagtttatggacctgtacagccacctggtgccggtatatgacgtggagcccctggagaag
atcacagatgcctatcttgatcaatatctgtggtatgaagcagacaagaggcgactcttc
ccaccctggatcaaaccagctgacactgaaccgcctccactgctcgtctacaaatggtgc
caaggcattaacaacttgcaggatgtttgggaaactgcagaaggcgagtgcaacgtgatg
ctggagtcacgctacgagaagatgtatgagaagattgatttgacgttgctcaacaggcta
ctgcgtcttatcgtcgaccacaacattgccgattatatgacggccaagaacaatgtggtc
atcaactacaaggacatgaaccatacaaactcttacgggattatcaggggactccagttt
gcctcgttcattgtacagtactacggtctggtcatggatctgctggtgctgggtctgcat
cgggccagcgagatggcaggtccgccgcaaatgcccaatgacttcctcagtttccaagat
acggcaacagagagcgcccacccgatccggctctactgccgctacattgaccgcatccac
atcttcttcaggttttctgctgacgaggcgagagacctcattcagaggtacctgacagag
caccctgaccccaacaatgagaacattgtgggctacaacaataaaaaatgctggccccgt
gacgcccgcatgagactcatgaagcatgatgtcaatcttggacgtgccgtcttctgggac
atcaagaaccgcctgccacggtcagtgacgacagtccagtgggagaacagctttgtgtca
gtctacagcaaagacaaccccaacctgctcttcaacatgtgcggcttcgagtgccgcatc
ttgcccaaatgtcggacaagctatgaggagttcacccataaagatggtgtctggaatttg
cagaatgaggtcaccaaagagaggacagctcagtgtttcctacgggtggatgatgaatcc
atgcagcgcttccacaacagagtgcggcagatcctgatggcctcgggctcaaccaccttc
acgaagattgtaaataaatggaacacagctcttattggcctgatgacgtacttccgagaa
gcggtggtcaacacccaggagctgctggacctgctggtcaagtgtgagaacaagattcaa
acgcgtatcaagatcgggctgaactcgaaaatgccgagccgtttcccgcctgttgttttc
tacactcccaaagagttgggcggcctgggcatgttgtccatgggccacgtgctcatacca
cagtctgatctgcgttggtccaagcagacagatgtgggaatcacccacttcaggtctgga
atgagccacgaagaggaccagctcattccaaatttgtatcgttacattcagccatgggaa
agtgagttcatcgactcccagagggtgtgggcggagtacgccctcaagaggcaggaggcc
attgcacagaacaggcggctgaccttggaggatttagaggactcgtgggaccgaggaatc
ccgcgtatcaacacgctttttcaaaaagacagacacactctggcctatgacaaaggctgg
agagtcagaactgattttaaacaataccaggtcctgaagcagaatccgttctggtggact
caccagaggcacgacggcaaactgtggaacctcaacaactaccgcacagacatgatccag
gccctgggcggcgtggagggcatcctggaacacaccctcttcaaaggcacttacttcccg
acctgggagggtctcttctgggagaaggcgagtggctttgaagaatcgatgaagtggaag
aagctgacaaatgctcagaggtccggtcttaaccaaatccccaaccgtcgcttcactctc
tggtggtcgcccacaatcaacagagccaatgtgtacgtgggtttccaggtgcaactcgac
ttaaccggaatcttcatgcacggaaagattccgaccctgaagatctccctcattcagatc
ttcagagctcacttgtggcagaagatccacgagagcattgtcatggatctttgtcaggtt
tttgaccaggaactggacgctctcgagattgagactgtgcagaaggagaccatccacccc
aggaagtcgtacaagatgaactcgtcctgtgctgacatcctgctttttgcatcctacaag
tggaacgtctctcggccatctttgctggcagattcaaaggatgtgatggacagcaccacc
acacaaaagtactggattgacattcagctgcgttggggcgactacgactctcatgacatt
gagcgctacgccagggccaagttcttggactacaccactgacaacatgagtatttatcct
tcccccactggagtgctgatcgccatcgacttggcctacaacctccacagtggctacggg
aactggttcccgggcagcaagcctttgatccagcaggccatggccaagatcatgaaggcc
aaccccgccctgtacgtgctgagggagcgaatccgcaagggtttgcagctttactcctca
gagcccaccgagccctacctgtcctcgcagaactacggcgaactcttctcgaaccaaatc
atctggttcgtggatgacaccaacgtctacagagtcaccatccacaagacctttgagggc
aacttgaccaccaaacccatcaacggagccattttcatcttcaaccccagaaccggacag
ctcttcctcaagatcattcacacgtccgtgtgggccggacaaaaacgtctgggacagctg
gcgaaatggaagacggccgaagaagttgccgccttgatccgctcgctgcctgtggaggag
caaccgaagcagatcatcgtgacgaggaagggaatgctggaccctctggaggtccacttg
ctcgacttccccaacattgtgatcaaaggctccgagttacagttgcccttccaggcctgt
ctgaaggtggagaagtttggagacctgatcctcaaagccactgaaccgcagatggtgctg
ttcaacctttacgatgattggctgaagaccatttcgtcttacaccgccttctcccgactc
atcctgatcctcagagcgctccacgtcaacaacgaccgggccaaagtgatcctcaaaccc
gacaagaccaccatcactgagcctcatcacatttggcccacgctcacagatgaggaatgg
atcaaggtggaagtgcaactgaaagacctgatcctggctgactacggcaaaaagaacaac
gtgaacgtggcttcgttgacccagtcggagatccgtgacatcatcctgggtatggagatc
tccgccccctcgcagcaacgccagcagatcgccgagattgagaagcagaccaaagagcag
tcgcagctcaccgccacgcagacgcgcacggtcaacaagcacggcgacgagatcatcacg
tccaccacgtccaactacgagacccagaccttctcctccaagactgagtggagggtcagg
gcgatatctgctgccaacctccatctccgcaccaaccacatttacgtgtcttctgacgac
atcaaggagacgggatacacgtacatcctgcccaagaatgtcctcaagaagttcatctgc
atttcagatttgcgtgcacagattgcaggctacctttacggcaccagcccacccgacaac
ccacaagtgaaggagatccgttgtatcgtcatggtgccgcaatgggggacgcaccagacg
gtccacctgcccaaccagctgcctggacatgaatatctgaaagaaatggaacccctcggt
tggatccacacgcagcccaatgagtcgccgcagttgtcccctcaggacgtcaccacccac
gccaagatcatggccgacaatccctcgtgggacggcgaaaagaccatcatcatcacgtgc
agcttcactccgggctcgtgcacgctgacggcctacaagttgacgccgagcggctacgag
tggggccggcagaacacggacaagggcaacaaccccaaaggctacctgccgtcccactac
gagcgggtccagatgctgctctctgaccgcttcctgggcttctttatggtaccgggtcag
gtttcctggaactacaatttcatgggtgtacgtcacgacccgaacatgaaatacgacctg
cagctggccaaccccaaggagttctaccacgaagtccatcgcccgtcgcacttcctcaac
tttgcctcgttgcaggagggtgaaatctacaacgctgaccgtgaggatatgtacggttga
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integrated database retrieval system
