Syngnathoides biaculeatus (alligator pipefish): 133504773
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Entry
133504773 CDS
T09681
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
133504773 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbia03021
]
133504773 (supt5h)
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133504773 (supt5h)
Transcription machinery [BR:
sbia03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
133504773 (supt5h)
RNA polymerase I system
133504773 (supt5h)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
133504773 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
Spt5-NGN
KOW7_SPT5
KOW6_SPT5
KOWx_SPT5
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
DUF6406
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
133504773
NCBI-ProteinID:
XP_061683342
LinkDB
All DBs
Position
8:complement(9156259..9171155)
Genome browser
AA seq
936 aa
AA seq
DB search
MRKYAKSSGGEHYSGGSEELSDDITQQQLLPGVKDPNLWTVKCKIGEERTTAIALMRKFI
AYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVKAAIEGIGNLRMGLWNQQMVPIKEMT
DVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQNTISLKMIPRIELDRIKAKMS
LKDWYAKRKKFKRPAQRLFDAEKIRSLGGEVSHDGDFMIFEGNRYSRKGFLFKSFAMSAV
ITDGVKPTLSELEKFEDQPEGIDLEVVTESGKEREHNLQAGDNVEVCEGELINLQGKILS
VDGNKITIMPKHEDLKDPLEFPAQELKKYFRMGDHVKVIAGRYEGDTGLIVRVEENFVIL
FSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELVQLDPQTVGVIVRLERETFQVLN
MHGKVLTVRHQAVNRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFA
FLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHHGGGGGGG
AQQRGGGGGGGGMGRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQ
TISVDRQRLTTTGAQKHSGMTSTHGRTPMYGSGSRTPMCGSQTPLHDGSRTPHSGSQTPL
HDGSRTPGQSGAWDPSNPNTPSRNDEEYDFGYDDEPSPSPQGYGGTPNPQTPGYPEVPSP
QVNNQYNPQTPGTPAMYNTDQYSPYAVPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPA
SYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSNIEQGGSDWVTTDILVRV
KDSFMDLTGQTGVIRSVTGGMCSVFMQDSEKVVSVSGDHLEPVTPTKNDKVKVILGEHRE
ATGTLLSIDGDDGIVRKVLDNQLMILNLRFLGCLGH
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagtacgcaaagtcctcgggaggggagcactattcgggggggtcggaggagctc
tctgacgacatcacccagcagcagctacttcctggtgtcaaggatccgaatctgtggacc
gtcaagtgcaagattggggaggagaggacaaccgccattgcgctgatgaggaagttcatc
gcctatcagttcactgacacgccactccagatcaagtcggtggtggcccccgaccacgtg
aagggttacatctacgtggagtcctacaagcagactcacgtgaaagccgccatcgagggc
atcggaaacctccggatgggcttgtggaaccagcagatggtcccgatcaaagagatgacc
gacgtcctcaaggtggtcaaagaggtcaccaacttgaagcccaaatcctgggtcaggctc
aagcgaggcctgtacaaagacgacatcgcgcaggtggactacgtggagcccagccagaac
accatctcgctcaagatgatccctcgcatcgaactggaccgcatcaaagccaagatgagc
ttgaaagactggtatgccaagaggaagaagttcaagcggcccgctcagaggctttttgat
gcagaaaaaatccggtcgctcgggggggaggtcagtcacgacggcgacttcatgatcttc
gaggggaatcgctacagccgcaaaggattcctgttcaagagcttcgccatgtcggccgtg
atcacagacggtgtgaagcccacactgtcggagctggagaagtttgaagaccagccggaa
ggaatcgacctggaggtggtcaccgagtcagggaaggagcgggaacacaacctgcaggcc
ggcgacaacgtggaggtgtgcgagggcgagttgatcaacctgcagggaaagatcctcagc
gtggacggcaacaagatcaccatcatgcccaaacacgaagacctcaaggaccccctggag
ttcccagctcaagagttaaagaagtatttccggatgggcgaccacgtgaaagtgatcgcc
ggccgatacgaaggcgacacgggtcttatcgtacgcgtggaggagaactttgtcatcctc
ttctccgacctgaccatgcacgagctgaaggtgctgcccagagatctgcagctctgctcg
gaaacggcgtccggcgtggacgcgggtgggcagcacgagtggggggagctggtccagctg
gacccgcagacggtgggcgttatcgtgcggctggagcgagaaaccttccaggtgttgaac
atgcacggcaaagttctgacagtgcgccaccaggcggtcaaccgcaagaaggacaaccgc
ttcgctgtggctttggactcggagcagaacaacatccacgtcaaagacatcgtcaaagtc
atcgacgggcctcactcgggccgcgaaggcgaaatccgccaccttttccgaggtttcgcc
ttcctgcactgtaagaagctggtggagaacggcggcatgtttgtctgcaagactcgacac
ctggtgctggccggcggctccaagcccagggacgtgacaaacttcacggtgggcggcttc
gctcccatgagtcctcgcatcagcagccccatgcatcacggcggcggcggcggcggcggt
gctcagcaacgcggcggcggaggcggcggcggcggcatggggcggggccgaggacgacga
gacaacgagctgatcggtcagaccgttcgcatctcgcagggtccatacaaaggttacatc
ggtgtggtgaaggacgccacagagtccacggcccgagtggagcttcactccacctgtcag
accatctccgtcgacagacaacgcttgaccaccacgggtgcccagaaacacagcggaatg
acgtccacccacgggcgcacccccatgtacggctcgggctccaggacgcccatgtgtggc
tctcagacgccgctgcacgacggaagccgcacgccccacagcggctcgcagacgccgctg
cacgacggcagcaggacgccgggtcagagcggagcctgggaccccagcaaccccaacacg
ccgtccaggaacgacgaggagtacgacttcggctatgacgacgagccctcgccttcgcct
cagggctacggggggacccctaacccccagacgccaggttacccagaagtcccgtctccg
caggtcaacaatcagtacaaccctcagacgccgggcacgcccgccatgtacaacacggat
caatattccccctacgccgtcccctcgccccaagggtcctaccagcccagtccgagtcct
cagagctaccaccaggtggcgccctcgcccgtaggctaccagaacacgcactcgccggcc
agctaccacccgacgccgtcacccatggcctatcaggccagcccgagtccgagtccggtg
ggctacagccccatgacgcccggcgcgccctctcccggcggctacaacccccacacgccg
ggctccaacatcgagcaggggggcagcgactgggtgaccaccgacatcctggtgcgggtt
aaggactctttcatggacctgactggacagacgggagtcatccggagcgtcacgggcggc
atgtgctccgtgttcatgcaggactcggagaaggtcgtgagcgtcagcggcgaccacctg
gagcccgtcacgcccaccaagaacgacaaggtgaaggtgatcctgggagagcaccgcgag
gccacggggacgctgctgagcatcgacggcgacgacggcatcgtccgcaaagtcctcgac
aaccagctgatgatcctcaacctgaggttcctgggctgtctgggccactga
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