Syngnathoides biaculeatus (alligator pipefish): 133504793
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Entry
133504793 CDS
T09681
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46 isoform X1
KO
K12590
exosome complex component RRP46
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133504793 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133504793 (exosc5)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133504793 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
133504793
NCBI-ProteinID:
XP_061683380
LinkDB
All DBs
Position
8:10146149..10150586
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AA seq
220 aa
AA seq
DB search
MAECRSSTVNLREFGCEQNLLSRPDGSASFIQGDTSVLAAVYGPAEVKVSKEIYDRATLE
VIIQPKVGLPSVKERAQEQCVRESCEASLLLSFHPRSSLTLVLQELHNDGSLLSCYLNAS
CMAMMDAGLPMSCLFCGVTCAIHTDGRIITDPTAAQEAESRALLTFAIDSKERRVMMTST
KGSFSVHEMQQCIAVSQTVSEKIFSFHRESLKRRYSKSVL
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atggctgagtgtcgttcgtccacagttaacctcagagagttcggatgcgagcaaaatttg
ctgtctcgtcctgacggttcggcgtctttcatccaaggtgacacaagtgtgctggcagca
gtgtacggcccagctgaagtcaaagtaagtaaagagatttacgaccgagccacgctggaa
gtgatcatacaacccaaagttggacttccaagtgtgaaggagcgtgctcaagaacagtgt
gtgcgggaaagttgcgaggcgtctctgctgctgtcctttcaccctcgctcgtccctcaca
ctcgtcttacaggagctccataatgacgggtctctcttgtcctgttacctcaacgcctcc
tgcatggctatgatggacgccggcttgccgatgagttgtctcttttgcggcgttacctgc
gccatccacacggacggaagaatcatcactgacccgactgctgctcaggaagcggagagt
cgagcgctgttgacctttgccatcgacagcaaagagcgccgagtgatgatgacgtcgacc
aaaggatcgttttcagtgcacgagatgcagcagtgcatcgctgtcagtcaaacagtgtcc
gagaagatcttcagtttccacagagagtcgctcaagcggcgttactccaaaagtgtactt
tga
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