Syngnathoides biaculeatus (alligator pipefish): 133504981
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Entry
133504981 CDS
T09681
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
133504981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133504981
03041 Spliceosome [BR:
sbia03041
]
133504981
03036 Chromosome and associated proteins [BR:
sbia03036
]
133504981
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133504981
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133504981
mRNA cycle factors
Common to processing body (P body) and stress granule
133504981
Spliceosome [BR:
sbia03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
133504981
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133504981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
133504981
NCBI-ProteinID:
XP_061683738
LinkDB
All DBs
Position
2:complement(4480648..4502174)
Genome browser
AA seq
738 aa
AA seq
DB search
MSHVSVENVHGLEQQLAVLDLNVADGQGGGTNRRYIPPHLRNKDGPKNGGNVFAARAGYA
IAPAAAFGWDGSRGNFVNGYHDNRMTGGNAYNRGPPRMERGRGGMGAGGYRGNRTGSFNP
INTAPPMSFGLYENKDAGGWNTAKDAYSSFGNNRGKSAFFNDRSNANRGRFDHGGYSGGG
GGNSRWVEEASCDGDWSKPTPLNERLEHELFSGSNTGINFEKYDDIPVEATGQNCPHHIE
SFQDIDMGEIIMGNIALSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLPILS
QIYAEGPGDAVNAAKASGQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSRVR
PCVVYGGADIGHQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMG
FEPQIRRIVEQDTMPPKGSRQTMMFSATFPKEIQILARDFLDDYIFLAVGRVGSTSENIT
QKVVWVEESDKRSFLLDLLSATVIPSEVQDNAGENMEKPGKDSLTLVFVETKKGADALED
FLYREGYACTSIHGDRSQRDREEALNQFRSGKCPILVATAVAARGLDISNVKHVINFDLP
SDIEEYVHRIGRTGRVGNLGLATSFFNDRNGNITKDLLDILVEAKQEVPSWLESLAYEHQ
HKSSNRGRSKRFAGGFGARDYRQTAAGGNAGGFGGRGVRNQAGHGGARGFAGGGFGTFYT
SDGYGGNYSHSQVDWWGN
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtgtccgtcgagaatgtccacggtctagaacaacagcttgctgtcctagac
ttgaatgtggcagacggacaaggtggtggcaccaacagaagatacattcctccacattta
cggaacaaagatggtcctaaaaatggaggaaatgtgttcgctgccagggccggctacgct
attgcacctgccgccgccttcggttgggacgggagccgtggcaactttgtcaacggctac
catgacaaccgcatgactggcgggaacgcttataaccgtggcccgcctcgcatggagcga
gggcgagggggcatgggcgcaggcggctatcgtggcaacagaaccggctccttcaatccc
atcaacactgctccgccgatgagcttcggcttgtacgaaaacaaagatgctggcgggtgg
aacactgccaaggacgcctacagcagctttggaaacaacagaggaaaatcggctttcttc
aatgaccgaagtaacgcaaatcgcggaaggtttgatcacggtggctacagtggcggcgga
ggtgggaacagccgctgggtggaggaggccagctgcgatggagactggtccaagccaact
ccgctgaatgaacgactcgagcatgagttgttctccggcagcaacactgggattaatttt
gagaaatacgatgacattccagttgaggctactggacagaactgccctcatcacattgag
agtttccaggatattgacatgggtgaaatcatcatgggcaatattgcgctgagccgctac
acacgcccgaccccagtccagaaatatgctattccaatcgtcaagtccaaacgagatctc
atggcctgcgcacaaacgggttctggcaagactgctgcattcctgctgccaattctcagc
caaatatacgcagaggggccaggagatgctgttaatgcggctaaagcctctgggcaggag
aatggaaaatatggccgtcgtaagcagtaccccatttctttggtcctggccccgactcga
gaactggcactgcagatatatgatgaagccaggaagttttcctaccggtccagagtgcgt
ccctgtgttgtctacggaggagccgacatcgggcaccagatcagggatcttgagagaggc
tgccacctcctagtggccacgcctggaagacttgtggacatgatggagaggggcaagatt
gggctagactactgcaagtaccttgtcctggatgaagcggatcggatgctggacatgggt
ttcgagccgcagatacggcgcatcgtggaacaggacaccatgcctcccaaaggcagccgg
cagaccatgatgttcagcgccacctttcccaaagaaatccagattctggccagggatttc
ctggacgactatatcttcctagcagtgggcagagtgggctccacctcagagaacatcact
cagaaggttgtttgggtggaagagagcgacaagaggtcttttctcctggacttgctcagt
gctacagtcatccccagtgaagtgcaggacaatgctggagagaacatggagaagcctggc
aaggactcgctgacgctggtttttgtggaaaccaaaaagggcgccgacgccttagaggac
ttcctgtaccgggaaggttacgcctgcaccagcatccatggtgaccgctcccagagggac
agagaggaggctctgaaccaattccgatctggaaaatgccccatcctggtggccacagct
gttgcagctcgtggtcttgacatctccaacgtgaaacacgttattaactttgacctgccg
agtgacattgaggagtatgtccaccgtattggacgcacagggcgagtgggaaatctggga
ctggcaacgtcgttcttcaacgacaggaacggcaacatcactaaagacctgttggacatc
ctggttgaagccaaacaggaagttccttcctggctagagagcctggcttatgagcaccag
cataagagcagcaaccgtggacgttctaagaggtttgcaggtggttttggagcacgtgac
tatcgtcagactgctgccggaggcaacgctggaggctttggagggcgtggcgttcggaac
caggcgggacacggaggagcccgcggctttgctggaggcggattcggaaccttctacacg
agcgacggctacggaggcaactactctcattctcaagttgactggtggggcaactag
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