Syngnathoides biaculeatus (alligator pipefish): 133505324
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Entry
133505324 CDS
T09681
Name
(RefSeq) protocadherin-16-like isoform X1
KO
K16507
protocadherin-16/23
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sbia04515
]
133505324
Cell adhesion molecules [BR:
sbia04515
]
Cadherins
Cadherin related
133505324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_pro
Cadherin_4
CADH_Y-type_LIR
NOMO_3rd
DUF4766
LapA_dom
YajC
Motif
Other DBs
NCBI-GeneID:
133505324
NCBI-ProteinID:
XP_061684444
LinkDB
All DBs
Position
8:complement(17198390..17299576)
Genome browser
AA seq
3283 aa
AA seq
DB search
MKTAAKGSGKSAMDPLQCDSCWMRRMMLMLYVVLQLISVLSPVVQGTLDLQLDEEQPAGT
IVGDISAGLPPGITAALYFISDHEGTGVSTDLDIDESTGIIKTAKVLDRELRDRYNFIAV
TMTGVTVEVTIKVNDINDHGPTFPKKHATFIIPEQTAIGTRFPLDPAMDADGGHFTTQGY
LIRDGNIGQAFTLETRRGSNEVLYLDLVVNAILDREKRSSYSLSLEGFDGGSPQRTDQMT
LDITVQDINDNAPLFNQSRYHAIISENLQPGNNILQVFATDADEGDNGMVTYEINRRQSD
PDHYFVIEPHTGIITLNKPLDFEMRRVHELVVQAQDNATHPEVTNAFVTIHVRDYNDNQP
TMTIIFLSEDGSPQISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFGLTTKDNI
IYLVCVDQILDREERDIYELRVMATDSGTPPLRAESSFTIEVTDINDNPPLFDQTVYRQV
IPEVVFPGSFVLQVTARDKDQGPNGDISYSILRDKGAFADWFSIDAITGIITTLSQLDYE
KNPNPSITVMATDGGRPPLSSTAVVNIVLQDINDNEPVFETNFYNVSINEDTAPGTCILE
VMATDADGGSFGSITYSLSSGLNSATTSLFTIDKETGVICTRTALDRDQGQSSYDFTVTA
VDGGGLSTLAYVKVDLVDVNDNRPAFYPVSYAVSLSSQSAPGTSVVRVIAYDPDSGENGR
ITYKTVSGGSSPYFTLNKDTGVISLSRSVHGKANSIIPMVISAQDSGGLATLVNARVNIS
VVAGTVAPPVFEQAQYYFTVSEDVLQGTVVGTVLAKSKTGPLRDMAYTISSGDPTGYFTV
DPETGALRTSLSLDHESQPTLDLEVQARTGNPPAFGQTRVHITVEDVNDNPPVFFPSSSE
SLLLPEQTEIGTLVYRVQAEDRDSGENGQLSFDVSSPSGIQRAFSIERSSGDLRLVGVLN
YERVPRYDLQVIAKDSGVPQLSATFMLVVHVQAENDQGPVFDTLTYRVELKEGTPINTRF
LRVRALNRETSGSGYFSPLSYHLRPDGDAAGFGIASDSGWLFVKSALDREVKDMYLLTVV
ASAGHGHLKKTGSATVRISVTDENDNPPRLTQPRVFMAVRENLPAGTGFGHVLASDRDSG
SNGRLSYRLVYPDRNFQINSQTGEMSTKATLDREQQSSYQLAVVVQDGGSPSRSATGTVF
ISVLDDNDNTPAFVHSHPGKKLILKVSEGHSSGVLLGTVQAKDPDEGENGTIHYSLSGPR
AERFFLNPNTGELHSSSPLSHSERPEYELTVTASDRGLPPRSASCAIAIQVLSMSRPSSK
TNSYSLAFNSVEEAKPGSVVGSVRLHERETPAEGEVTYMVVGGTDRDGTFVVDRLTGDVY
LARPLDYEQDAHYTLKIEVDDFSQAPPISTLVHLDINVKDSNDHAPQFPEDPVTIVISEN
VQPGTSVFTFQATDKDGSGPNSDLRYSILQHFPETPGLFNLDASTGVLTLNQELDHEVNP
SLVLVVKATDSALDAGERQWSSVTARIYVTDENDNTPVFSSPTAVSVMEDQPIGFVALYV
MARDADKGENGRVTYRVQSGNAGGTFSLNPNTGSLSIFKPLDREEQEVFNLTIVAEDQGA
PRRSSSQLLRVYVVDVNDEVPRFEESNYEGQIAENQPRGTAVLTVSAFDLDQGSNGKVTY
GGISVEGFTINPVTGVITTTQPLDRELREFYTVTVYAKDGGLPPNYAKASVRIRVLDEND
NAPVFGRLFYGIEVPENTESRLLFTLRATDKDAGDSEKIIYKITAGDPAGDFRLDRESGA
LSTSGPLDREKKARYALTVAAQDQGHPSRSSTATVEVTVMDMNDHSPQFTSSSYTADVSE
DVPMGSLVLDVKATDLDEGLNSQVVYFLSQGSKSMFIIDQYTGRIITAAPLDRERTPSYT
FEVCATDSSPSNPRNSTARVTVHIQDVNDNAPFFIQDPLILNISASSVSNQRVLATMRAE
DKDFGANGSVFYRFANSVRGFTINSLTGAIQATEKLQGLTQSQRTLIVQAMDQGNPAQSS
LGVVIVYIKEQMYRGIRFSRTARDVSLQENAAKGTVVTQTQAQYPDGSQNGVSYSLFSGN
RLQSFGINTMTGEIWVQKSEGLDYEETPKLRLVVKAETASSSSYMAVNLILQDVNDNLPR
FQLQNYVAYIREAQGHDFPIIQVAADDLDQGQNGQVTYSIRSSSMSGLFKIDPLTGSIST
AAIMDREIWTQTKLVIMATDRGTPRLAGSATLTVIIIDLNDNSPMIPVPREIRVPEDTLI
GTVISQVTGNDVDSGPALSYTLYLDGDSKDMFGIHCYGGGISLTRALDYEERTWFTLTIQ
SSDSEHQSEANLTVLVEDVNDNAPAFTQDLYQVIVSEHLPEGSALITVTATDSDSGDNGK
IIYKVMSSTKGVFSIDPSNGTLFVNQKTEFDFENPSILVVVEARDQGSPSLSSIATVQIQ
VSDINDNAPIFHQSEYRASVSEDELPGSTLLTLEAVDGDLSRENCGFDFAIASGNTGNTF
QIESSVHFLEGRGFQTVGSLILVEELDFEAVSSYNLTVVVSDRGIPQRSSCVPILVSVTD
VNDNPPAFGRGEYSVVLSESATVGTEVINLSATDPDSAPNGEVQYSISSGDKTGLFQVDQ
WTGALKLQRSLGSENQLSHMIVVQATDGLGHYAFAPVSIDVKDINDHWPFFPLNQVTASI
RENQPKNALVTMLHAIDHDRGAFGKLQYYMLEDSQDGAEAFLINQTSGEVRTRSTFDFEK
VNSFNFMVAAMDAGNYSATVTVHVYVSGEDEYDPVFTSPEFSFKVPEDAKKGQIIGRVQA
RDEDGGLDGIVLYSLSGNSPYFEVNKSTGAIFLKMDSHGTHVSRSKREVRLLTLDLTAHS
PLENSRTAAVKVTVDVSHTSFGLATDINMLLVSVIAVSLGTIVILCIIAVALFFVKLRRQ
RKEQKRHSRTKASATMLHKFEETKIAANEIIYHQALPGYVADQSGGTSGGPYTRGGSLDP
SHSSGRGSAEAEAAEDDEIRMINEYPRVSSISSSMQERISARGPDSGIQQDADQLSDVSC
EPSIDWFKGKKMGSLSGTLLAGQVPIYRDEGGGYVGMGRGLSVSHHKDYMFPEDGKPTVD
GSLTAIVASDEELRGSYNWDYLLNWCPQFQPLASVFTEIARLKDETAPPHPRRSFHRKIK
AESRIDPPPLITSVAHPSAKTVPPKPAAGKTFPQLSTFRRSPLSSEGSMCSVAMSPSFSP
SLSPLAARSPAVTPFSVSQGPSASVISTTEHNLEHIDEAELRI
NT seq
9852 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagctgccaagggttccgggaagtctgcaatggatcctttgcagtgtgacagc
tgttggatgaggagaatgatgctgatgttgtacgtagtcctgcagctcatttcagtcctt
tcgccggtggttcaaggcaccctggatctacaactggatgaggagcaaccagcgggaacc
atcgttggcgacataagtgcggggctaccacctggcatcacagcggcactgtacttcatt
tctgaccacgaaggcactggtgtgagcactgatttggacattgatgagagcacaggaatc
atcaagacagccaaggtattggaccgagaactgagggacagatataatttcatcgcagtc
accatgacaggtgtaacagtggaggtaaccatcaaggtcaatgatataaatgaccatggg
cccacgtttccgaaaaaacatgccactttcataatcccggagcagactgctataggcact
aggtttcctcttgacccggcaatggatgcggacggaggtcatttcaccacccagggttac
ctcattagggatggaaacattggtcaggctttcaccttggagaccaggaggggaagcaat
gaagtcttgtatctggacttggtggtcaatgccatactggacagggagaaaagatcatct
tactctttgtccttagagggctttgatggaggttctcctcaaagaactgatcaaatgacc
ttagatatcaccgtccaagatatcaacgacaatgctcctctgtttaatcagagccgctac
catgctatcatatccgagaacctgcaaccgggaaacaacatcttgcaggtgtttgccaca
gatgcagacgaaggagacaatggcatggtgacatatgagatcaacaggcgacaaagtgac
ccggatcattactttgtcatcgaaccgcacacgggcatcattactctcaacaagccgctg
gactttgagatgcggcgagtccacgaactggtggtgcaagcccaagacaatgccacacac
ccagaggtgaccaatgcctttgtcaccatccacgtcagagactacaatgacaaccagccc
accatgacaatcatctttctaagtgaagatggctctcctcaaatctcagagggcgcacag
ccgggacagtacgtggctcggatatctgtcacagacccagactacggcgagtacgccaac
gtcaacgtgtcgctggagggcggagatggcaaattcggtctgacaaccaaagacaatatc
atctatctggtctgtgtggatcagattcttgatcgggaagagagagacatttatgagttg
agggtaatggcgacagactcaggcacgcctcctctccgggccgaatcctcgttcaccatt
gaggtgaccgacattaacgacaacccgccgctgtttgaccaaacggtgtaccggcaggtc
attccggaagtggtgtttcccgggagttttgtgttacaggtcactgcccgagacaaagac
caagggcccaatggcgacattagctacagcatccttcgggataaaggagcttttgctgat
tggttcagcatagatgccattacagggattatcaccactctgtcccagctggattatgaa
aagaaccccaatcccagtataactgtaatggccacagatggagggagaccgccgctgtca
tcaaccgcggtggtcaacattgtacttcaggatattaacgacaatgagcctgtcttcgag
accaacttctacaatgtctccatcaatgaggacacggctccggggacgtgcatcctggag
gtgatggcaacagatgcggacggcggctcttttggctccatcacgtactcgctgagctcg
gggctgaacagtgccaccacctctctcttcaccattgacaaagagaccggcgtcatctgc
acccggaccgcactggaccgtgatcaaggccagagcagctacgacttcactgttactgcg
gtggatggggggggactgagtacgctcgcctacgtgaaggtggatctggtggacgtgaat
gataacagacccgccttttatccggtgagctacgctgtcagtcttagctcgcagagcgct
cctgggacctctgtggtccgagtgatcgcctacgacccagattcgggagagaatggccga
attacgtacaaaacggtatccggagggtcttccccttacttcaccctaaacaaagacaca
ggtgtgatctctctttctcggtctgtccacggcaaggccaactccatcataccaatggtg
atctcagcccaggacagcggaggtctggccaccctggtgaacgccagggtcaacatcagc
gtggtagcgggtacagtggcacctcctgtgtttgaacaggctcagtactacttcacagtt
tccgaggatgttttgcagggaactgtcgtggggactgtcctggccaagagtaagacaggc
cccctcagagatatggcctacaccatcagctctggggaccccacaggatactttacagtg
gatccagaaactggggccctgcggaccagtctttccctagatcacgaatcccagcctacg
cttgacttggaagtgcaggcccggactgggaacccgcccgcttttggccagacccgggtt
cacatcaccgtcgaggatgtcaacgataaccctcctgtgttttttccctcgtcctccgag
tccttgttgctgcctgagcaaacagaaattgggactttggtatatcgcgtacaggctgag
gacagagattctggagaaaacggccagctgtcctttgatgtgtcatctccaagtggcatc
cagagagcttttagcattgaacgcagcagcggggatctacgactggtgggggtcctcaac
tatgagcgtgtcccccgctatgatctccaagtgattgccaaagatagtggagtgcctcag
ctcagtgcgacctttatgcttgtggtccatgtccaagcagagaatgaccagggaccagtg
tttgatactctcacctacagagtggaactaaaagaaggcactccaattaatacgcgcttc
ctacgggtccgagccctcaatagagaaacatcaggctccggttacttcagccctctttca
tatcacctgcgaccagatggcgatgctgccggcttcgggattgcttcggacagcggctgg
ctcttcgtgaagagcgccctcgaccgagaagtgaaggacatgtatctcctgaccgtggtg
gccagtgcaggtcacggacatctgaaaaagaccggcagtgccaccgtgaggatatctgtg
acagatgagaacgacaacccacctcggcttacccaacccagagtcttcatggctgtgagg
gaaaacttgccggcggggacgggcttcggtcacgtgttggccagcgatcgtgacagcggc
tccaacggacgccttagctaccgtctggtttaccctgaccgtaacttccagatcaattcg
caaacaggtgaaatgagcacaaaggccactttggacagggagcagcagtccagctaccag
ctggcggtggtcgtgcaagacggaggctcaccttcgcgcagcgccaccggaaccgtcttc
ataagtgtgctggacgacaacgacaacactccagcatttgtccacagccacccgggaaaa
aaactcatcttaaaggtgtcggagggtcactcctctggggttctactgggcacagtacaa
gccaaagaccctgacgaaggagagaatggtaccatacactactctttgtcaggtccaagg
gcagagcgcttcttcctgaaccccaacacgggcgagctgcactcgtcatcgccccttagc
cactcagagcgtcccgaatacgagttgacggttacggcaagcgaccgaggactgccgcct
cgcagcgcctcctgcgccatcgccattcaggttctcagcatgagcagaccctcttcaaag
accaattcttattctctagctttcaactctgtggaagaggccaagccgggttcagtcgtc
ggttccgtccggcttcacgaaagagaaactccggcagagggcgaagttacctacatggtg
gtggggggtaccgacagggacgggaccttcgtggtggatcgcttgaccggagacgtctat
ctcgcacggcctctcgattatgagcaggatgcgcactacacgctgaagatcgaggttgat
gacttctcccaggccccgcccatcagcaccctggtccaccttgacattaacgtaaaggac
agcaatgaccacgcccctcagttccccgaggaccctgtcacgatcgtcatctcagaaaac
gtccagccgggtacttctgtcttcacgttccaggccacagacaaggatggaagtgggccc
aatagtgacctgaggtactccatcctccaacattttccagaaacacccggtctgttcaac
ctggacgcttccactggcgttttaaccttaaaccaagagctggaccacgaggtcaacccc
agtctggtcttggtggttaaagcaacggactccgccttggatgccggtgagaggcagtgg
agctcggtcactgcgaggatttacgtcacagatgagaacgacaacacaccggtgttcagc
tcgccgacggcggtgagcgtgatggaggaccagcccatcggcttcgtggcgctctacgtc
atggccagggatgcggacaaaggggagaacggcagggtgacctaccgagtccaatcgggc
aacgcgggtggaaccttcagcctcaaccccaacacaggttctttatctatattcaaacct
ctggaccgcgaggaacaggaagtcttcaacctgaccatcgtggccgaggaccaaggcgcc
ccccgccgctcctccagccagctgctgcgcgtctacgtggtcgacgtcaacgacgaagtg
ccacggttcgaagagagcaactacgaaggccagatcgcagagaaccaaccgcgagggacc
gccgtgttgacggtgtcagcctttgacttggaccaaggatccaacggcaaagtgacatat
ggtggcatctccgttgagggttttaccatcaaccccgtgacaggcgtcatcaccaccact
cagccactggacagggagctgcgggagttctacactgtcacagtttatgcaaaagacgga
ggccttcccccgaactacgccaaagccagtgtgaggatccgggtgctggatgagaacgac
aacgcccccgtcttcggacgtctcttctatggcatcgaggtgccagagaacacagagtct
cggctccttttcacgcttcgagccactgacaaggatgctggtgatagcgagaagataatt
tacaaaataacagctggagacccggcaggagatttccgcttggaccgagagtccggtgca
ctttccacctctgggcctctggatcgggaaaagaaagccaggtacgccctgacggtagct
gcccaggatcagggccacccgtcccgcagcagcaccgccacggtggaggtaactgtcatg
gacatgaacgaccacagcccccagtttaccagcagcagctacacagcagacgtgtccgaa
gatgtgccgatgggctctttggtcctggatgtgaaagccaccgatctggatgagggcctc
aacagccaggttgtgtatttcctaagccagggctccaagagcatgttcattatagatcag
tacacaggccgtataatcacagcagcccccctcgatagagagcggaccccctcttatacc
tttgaggtgtgcgccactgactcgtcaccgtcgaaccctcgtaattctaccgcccgtgtc
accgtccacattcaagatgtcaatgacaatgcccccttcttcattcaggacccgcttatt
ttgaacatttccgccagcagtgtgtcaaaccaaagagtactggccacaatgagggccgag
gacaaggactttggggcaaacgggtctgtcttttatcgctttgccaactctgtcagggga
tttaccatcaactcgctgacaggagccatccaggccacggagaagctccagggtctgacc
caaagccagaggaccttgattgtgcaggccatggatcagggaaatccggctcagtcctct
ttgggcgtggtcattgtttatatcaaggagcagatgtacagagggattcgcttctctcgc
acagcacgggatgtcagtctgcaagaaaatgctgcaaaaggtacagtggtaactcagacc
caagcccagtatccagatggctctcaaaatggggtcagctacagtctcttcagcggaaac
cggttgcaatcatttggaataaacaccatgaccggtgaaatatgggtccagaaatccgaa
gggctagactacgaggagaccccaaaacttcgccttgtggtgaaagccgagacagcatcc
tccagctcctacatggcggttaacttaatcctgcaggatgtaaatgacaatttgcctcgc
ttccagctccagaactatgtagcctacatccgagaggcacagggtcacgattttcccatt
atccaggttgcagcagatgacctggaccagggtcaaaatggccaggtgacgtactccatt
aggtcgtcatccatgagtggcttgtttaagattgacccgctgactggcagcattagcact
gcagccatcatggatagagagatctggactcaaacaaagcttgtcatcatggcaacagac
cgtggaaccccacgactggctggctctgctacgctcaccgtgataatcatcgatctcaat
gacaacagtcccatgattcctgtgccgcgggagatccgagtgcctgaggacactctgata
ggtacggttatcagtcaagtgacaggaaacgatgtggattctgggccagcgctctcctac
acgctctacctggatggtgacagcaaggacatgtttggaatccactgctatggtggtggc
atttccctgacaagagcactggattatgaggagaggacttggttcacgctgaccatccaa
tcgtcggactctgaacatcaaagcgaagccaatctgaccgtgctagttgaggacgtcaat
gacaacgcccctgccttcacccaagacttgtaccaggtgattgtatcagagcacctccca
gaaggcagtgctctcatcactgtaacagcgactgactctgactctggggataacggaaag
attatctacaaagtcatgtcctcgactaagggtgtcttctccattgacccaagcaatggc
actctgtttgttaaccaaaaaacagagtttgactttgaaaatccatccatcctcgtggta
gttgaggctcgagaccagggcagtccatctctctcttccatcgctaccgtccaaatccaa
gtgtccgacatcaatgacaatgctcccatctttcatcagtctgagtacagagcatccgtg
tctgaagacgaacttcccgggtccacacttctgacgttagaggcagtggacggagacctg
tcacgggaaaactgtggttttgattttgccatagccagtggcaacactggtaacaccttc
cagattgagagcagcgtgcacttcttggaaggcagaggcttccagacagttggaagcctg
atcctggtggaagagctggatttcgaagccgtgtcgagttataacctgactgtcgtggta
tcagatcgtgggataccacagcgcagctcctgcgtaccgatcttagtcagcgtcacggat
gtcaacgacaaccctccggctttcggccgaggagagtacagtgtggtgcttagcgagagt
gcgactgtcggaacagaggtgattaatttgtctgccactgatccagactctgctcctaat
ggggaggtgcagtactctataagctcaggggacaagacgggccttttccaggtggaccag
tggactggggccttgaagctacagcgatctctgggcagcgaaaaccagttgtcccacatg
attgttgtccaagctactgacggcttgggacactacgcctttgccccagtcagcattgat
gtgaaggacatcaatgaccactggcctttctttccactcaatcaagtaacagctagcatc
agggagaaccagcccaagaatgccttagtaaccatgctgcatgccatcgaccacgataga
ggggcctttggcaagttgcagtactacatgctggaggactctcaagatggagcagaggct
ttcctcatcaaccaaacatcaggagaagtgcggacccgctcgacttttgactttgagaaa
gtgaactccttcaattttatggttgcagcaatggacgcgggcaactattctgctaccgtc
acagtgcatgtttatgtctcgggggaggatgagtatgatcctgtttttacctccccagag
ttttcattcaaagtgcccgaggatgcaaagaaaggacagattatcggcagagtgcaagcc
agagatgaagatggaggcctagacggcattgtcctgtactcgctgtctggaaattcccct
tatttcgaagtcaacaaatcaacaggtgccatcttcctgaagatggacagccatggtaca
cacgtaagccgctccaaaagagaagtgcgcctcctgacgctggacctgacagctcacagt
cctctagaaaattcacgcacggcagctgtcaaagtaaccgtcgacgtgagccacacctct
ttcggcctcgccacagacattaacatgctgctcgtaagtgtcatcgctgtttctctggga
acaatagtcatactgtgcataattgccgtggccctttttttcgtcaaactgaggcgccag
aggaaggaacaaaaaagacatagtagaacaaaggcatcagccaccatgctgcacaagttt
gaggagacgaaaatagccgcaaatgagattatttaccaccaggccctccctggctacgtt
gccgatcaaagcggcggcaccagtggggggccgtacactcgtgggggatccctggacccc
tcccactccagtgggcgtggctccgcggaggccgaggcagcggaggacgatgagatccgg
atgataaacgaataccctcgcgtgtctagcatctcctcctccatgcaggagcgcatctct
gcccgaggtccagactctggtatccagcaggacgcagaccagctgtcagatgtgtcatgt
gagccttccattgattggtttaaagggaaaaaaatggggagcctgagcggtaccctgcta
gccggacaggtgccaatctaccgcgatgagggaggcgggtatgtgggcatggggcggggc
ctcagcgtttctcaccataaagactacatgttccccgaggacggaaagcccactgtggac
ggctccttgacggccatcgtggccagcgacgaggaattgaggggcagctacaactgggac
tatctgctcaactggtgtccccaattccaacctttagccagcgttttcaccgagatagcg
cgcttaaaagacgaaacggccccccctcacccccgtcgctcgttccaccgcaaaatcaaa
gcggagtccagaatcgacccacctccgcttatcacctccgtggcgcaccccagcgcaaaa
actgtaccgcctaagcctgctgcgggaaagaccttcccccagctgtcgacattccggagg
tcccccctcagcagtgagggatccatgtgctcggtggccatgtccccgagtttttccccg
tccctgtcgccgctggcggcacgctctcctgccgttacacccttcagcgtctcccagggg
ccgtcggcttccgtcatcagcacaacggaacacaatctggagcacattgacgaggctgaa
ctgaggatttga
DBGET
integrated database retrieval system
