Syngnathoides biaculeatus (alligator pipefish): 133505374
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Entry
133505374 CDS
T09681
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133505374 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbia04131
]
133505374 (scarf1)
Membrane trafficking [BR:
sbia04131
]
Endocytosis
Phagocytosis
Scavenger receptors
133505374 (scarf1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_PEAR1L
EGF_2
Motif
Other DBs
NCBI-GeneID:
133505374
NCBI-ProteinID:
XP_061684539
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All DBs
Position
8:11003644..11016062
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AA seq
899 aa
AA seq
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MKFLLRAAAALCCRWLCCSLALEPTGRNVCHDPRNPSTLVCCTGWRQNGKECPIPVCEGE
QACLKDELCVYPGVCRCPAGYYGAHCKTRCPPEFWASDCRQVCPCHPHGRCHPVTGECTC
NPNRWGPLCQYACKCARHGLCHPVHGNCTCDEGWWTSTCAKPCQCVPRGSAGPGCDQLTG
RCQCRKGHWGLKCPGPCHCYLSQCNQRTGVCECEGGWWGPNCDRRCNCDLAHSRCDPATG
QCVCHPGYGGDYCNQSCEPGMYGSSCKMSCGRCKGDEPCSSIDGACAACEAGWNGTRCDR
LCPPGYYGNGCLETCPRCRNNEPCDPKSGECWSCDPGWTGARCEVVCADRTYGEACRFLC
SPCYHGDCHHVTGKCICLPGFQGESCNNSCPGMQFGFNCSSACDCGEGVSCHPLTGACPS
SGRGALLAGLLVPFLLVLLAVLCCCLCCGGAPADGKDRTNVADGGLSVRMKYHVYSVLGN
IGAALPCISDWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTDGSSFDSDEEEGEALYC
VPPREEISGMEGSHFQEMSSKCNMLLDPSGFSTEDITSPFDIPRTSSNAKSKRPSVSFAE
GTRFSPKERRGSGQDVTSLPGYPRKPKPTWGGLKLSGEEDGGEAEEREDGVEFQVTERQN
LNCEVVDQEEDRKSRNTTRTASGRRRTMSNTAAQRKASAPSASNHPPAVSNKVTTVYVTV
GKAGKPTSKPETSSEGPVQAVLRRLGSIQRQREQGPGKAKPKDAEAIAKPPRRKLGARRN
VWEHGGPSGAEPAINKPARRKHAPDTAASDSGSTESIPLKRPLSSILKSVPEVASADSGG
SDGRRGHEPSGESSYLTVGPAGDAEVPSVDDEEAVSGKEQPCYENVMITHSYTSNASTT
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttctcctccgagctgcggctgctttatgctgccgctggctgtgctgctcgctg
gcgctggaacccaccgggaggaacgtgtgccacgaccccagaaatccgtccacccttgtg
tgctgcaccggctggcgtcagaacggcaaagagtgcccaatacctgtgtgtgagggggag
caggcctgtctgaaggatgagctttgtgtgtatcccggagtgtgtcgctgcccggccggc
tactacggggcgcactgtaaaactcggtgccctccggagttctgggcatcagactgccgt
caggtgtgcccgtgtcacccgcacggccgctgccaccccgtcaccggcgaatgcacctgc
aaccccaatcgctggggtcctctgtgccagtacgcctgcaaatgcgcccgccacggactc
tgccaccccgtgcacggaaactgcacctgcgacgaaggctggtggacgtccacttgcgcc
aagccgtgccagtgcgtccccaggggctcggcgggtcccggctgcgaccagctgacgggc
cgctgccagtgccgcaagggccactgggggctgaaatgtcccggcccttgccactgctac
ttgtcgcagtgcaaccagcgcaccggcgtgtgtgagtgcgagggcggctggtgggggccc
aactgtgaccggcgatgtaactgtgacctcgcacacagtcgatgcgaccctgccaccgga
cagtgtgtgtgccacccggggtacgggggcgactactgcaaccagtcgtgtgaacctggg
atgtacggcagcagttgtaaaatgagctgcggacgctgtaaaggcgacgaaccgtgctcc
tcaatcgacggcgcatgtgcggcctgcgaggccggctggaacgggacgcggtgcgaccgc
ctgtgcccgcctggttactatggtaacggctgcctggagacgtgcccgcggtgcaggaac
aacgagccctgcgatcccaaaagtggggaatgttggagctgcgatccgggatggacggga
gccaggtgcgaggtggtctgcgctgacaggacgtatggcgaggcttgccgcttcctgtgc
agcccatgttaccatggtgattgccatcacgtgacaggaaaatgcatctgtctgccgggc
tttcagggtgagagttgtaacaacagttgccccggcatgcagtttggcttcaactgttcc
tcagcgtgcgactgcggcgaaggcgtcagctgccacccgctcaccggtgcctgccccagc
agtggccgaggtgccctcctggcaggcctcttggttcctttcctgttggtgctcctcgct
gtcctatgctgctgcctctgttgtggaggagctccagcagatggcaaagacaggacgaat
gtggcagacggagggctgtcagtgcggatgaaatatcacgtctacagtgtcctgggcaac
attggcgccgccctaccttgcatctctgactggtcttcggggctccctcgggtcaccgtg
tctcaccatgaccccgaactgaccttcaaccacagcttcatcgagcctccttcctccggc
tgggtgaccgacgggtcgtccttcgacagcgacgaggaggagggggaagctctctactgc
gtccccccgagagaagaaatctcaggaatggagggtagtcacttccaggagatgagctcc
aagtgcaacatgctcttggacccgtcggggttcagcaccgaggacataacctcccccttc
gacatcccccgcacctccagcaacgccaaatccaagcgtccgtccgtctcctttgcagag
ggcacccgcttcagccccaaagagaggcggggctcgggtcaagacgtcacctctctgccc
gggtaccctcgcaaacccaagcccacctggggggggttgaagctttctggcgaggaagac
ggaggcgaggccgaggagagagaagacggcgtagaatttcaagtaacagagcggcaaaat
ctgaactgcgaagttgtagaccaggaggaggacagaaagtcgaggaacacaacgcggacc
gcatccggacgaagacgtaccatgtccaacacggcagctcaacgcaaagcgtcggcccct
tccgcttccaatcatccgcccgctgtttcaaacaaggtcaccacagtgtacgtgacggtg
ggcaaggcggggaagcccacgtccaaaccggaaaccagctcagagggccccgttcaggcc
gtgttaaggcgactgggaagtatccagagacaaagggagcaggggcctggcaaagccaaa
cccaaggatgcggaagccatcgccaaaccccccaggagaaaactcggggcccggaggaac
gtgtgggagcacggcggcccttcaggagccgagcccgccattaataaacccgcgaggagg
aaacacgctcctgacacggccgctagcgactcgggctcgacggagagcattcctctgaaa
aggccgctgtcgtccattttaaagagcgtgccggaggtggcgtcggccgactccggtggc
tcggatggacggcggggacatgagcccagcggggagagcagctacctgactgtggggcca
gcaggggacgctgaggtcccgagcgtggacgatgaagaagcggtgagtgggaaagagcaa
ccttgctatgaaaacgtcatgattacacactcgtatacctcaaacgcgagtactacgtga
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