Syngnathoides biaculeatus (alligator pipefish): 133505578
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Entry
133505578 CDS
T09681
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03030
DNA replication
sbia03410
Base excision repair
sbia03420
Nucleotide excision repair
sbia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133505578 (rfc1)
03410 Base excision repair
133505578 (rfc1)
03420 Nucleotide excision repair
133505578 (rfc1)
03430 Mismatch repair
133505578 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbia03032
]
133505578 (rfc1)
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133505578 (rfc1)
DNA replication proteins [BR:
sbia03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
133505578 (rfc1)
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
133505578 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
AAA_5
RuvB_N
Rad17
AAA_17
AAA_16
AAA_33
AAA_14
AAA_18
nSTAND3
AAA_19
AAA_7
NTPase_1
BRCT_2
RCF1-5-like_lid
NPHP3_N
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
133505578
NCBI-ProteinID:
XP_061684713
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All DBs
Position
9:complement(21108189..21117365)
Genome browser
AA seq
1134 aa
AA seq
DB search
MDIRRFFAPSALKGTTNGNIRSTKTNPLSSDEEVKKKRETKMKKQGAGGKPDQKRKKRAV
IDSDSDSEERERKSTKSPRKKQKPSKAAKSLKNESVLCVLETDSDSDDFDSLKKTSTGKS
NGTSQKSRSSPSVKETAKSPRKSSSVRSQTGVKRASAPVTPKPAPAPPPRAEHTPTSAFD
YFGNESIQRSGKKLVASAKRKTPVQDADDLSDEQIARHLQMVEDAELEKRVHEDEDFART
LAMLDAEPQAKKVRKDSDLKTSPGKRTALGPPKGNRNDGVSEDLVGPSPEKNAAPVKPSS
KLGMMMMKKREEEKGHVTPSKAQKTLKASPKKEPIAVSSAEKLQASKIASALQTSPTKAE
SAGPDEAEKKKANTSAYRNYLNRDGPRALGSKEIPTGAANCLEGCVFVLTGVLESLERDD
AKSLVERYGGKVTGNVSKKTTHLVQGRDSGVSKLEKAQSFGTKILSEDDLLELIRTKPGK
KSKYEIAAEAESKGSMKSRTSQVTPKASKGNSKSPQAPSPSKTGQTSTRGAKTTAGGRGS
VQSVSRSSDPSSSAGPPPRTKSVNEEGATLLWVDKYRPCSLKAVIGQQGDQSCANKLLRW
LQNWYRHHGGGGSKPAVSRLGKFGAGKDDGSGCKAALLSGPPGVGKTTTAALVCEELGFS
YVEMNASCTRSKSNLKEVVAESLNNTSIESFYKGTSQKVSAKHVLIMDEVDGMAGNEDRG
GVQELIGLIKNSRIPIICMCNDRNHQKIRSLANYCFDLRFHRPRLEQIKSAMMSIAFKEG
IKIPPPALNEIILASNQDIRQVIHNLSMWSAKDKAMTYDQCKCDAAAARKDLKLGPFDVC
RKVFAAGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGDVKSHLVLLSKTA
DSIGDGDLVDRRIRSGQNWSLLPTQAIYASVIPGELMRGYMSQFPSFPSWLGKNSSAGKH
WRCVQELASHMALKTTSGGQAVNLDYLHFLRQALLDPLQKLAADGAPLAVRLLDDYQLVR
EDVDGMMEMGSWGGRPDPYSRLDSKVKAAFTRAYNKEVHLTPYSLQAVKKGRGAGGEESE
AGVQGAALSDDEEEGDALSVDAMIKKKKKTKATKREKPDDSAKSKSKAKAKAKK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggacatccggcggttctttgcgccgtcggcactcaaagggacaacgaatggaaacatc
agaagcaccaagacaaatcctctttcctcagacgaagaggtgaaaaagaagagagagacc
aagatgaaaaagcaaggagcaggagggaaacctgaccagaaaaggaaaaaacgtgcagtc
atagactcggactctgactcagaggagcgagagcggaagtccacaaagtcgccaaggaag
aaacagaagccaagcaaggccgcaaagtccctcaagaacgagtctgttctctgcgtcttg
gaaacagactcagacagcgacgactttgactccctgaagaaaacctccacaggcaagtcg
aacggcacctcccaaaagagccgctccagtccaagtgtgaaagaaaccgcaaagtccccc
aggaagtcgtcctcggtccgttcgcaaactggagtcaaacgtgccagcgcgcctgtcacg
ccaaagccggcgccggcgccgcccccgcgggccgaacacacccccacctctgctttcgac
tactttggcaacgaaagcatccagcgctcgggcaagaagctggtcgccagcgccaaacga
aagactcctgtccaggacgccgacgatctgagcgacgagcagattgccaggcatctgcaa
atggttgaggatgctgagttggagaagcgggtccacgaagacgaagactttgcgcgaaca
cttgccatgctggatgcggaaccgcaggccaagaaggtccgtaaagactctgatcttaag
acctcccccgggaagaggactgcactcggccccccaaagggcaacagaaatgacggcgtg
tcggaggacctcgttggtccttcgcccgagaaaaacgcggctcctgtcaagcccagttcc
aaactggggatgatgatgatgaagaagagggaggaggaaaaaggacacgtgactccgagc
aaagcacagaaaactttgaaggcctcccccaaaaaggagccaatcgcagtctcgtcggca
gaaaagctgcaagcgtccaaaatagccagcgcacttcaaacatctcccacgaaggcagag
agcgcagggcctgacgaggcagagaagaagaaggccaacacgtccgcttacaggaattac
ctcaaccgagatgggccacgagcgctcggctccaaagaaatccccacgggtgcggccaac
tgcctggagggttgcgtctttgtgctgacgggcgttctggagtcgctggagagagacgac
gccaaatccctggtcgagcgctacggcggcaaagtgacgggcaacgtgagcaagaagacc
acccacctggtgcagggccgagacagcggcgtctccaagctggagaaggcgcagagtttc
ggtaccaaaatcctgagcgaggatgatctgttggagctgattaggaccaaaccgggaaag
aagtccaaatatgagattgctgcggaggctgagagcaaaggctctatgaagagcaggact
tctcaggtcacccctaaagcctccaaaggcaactccaaatcccctcaagctccgagtccc
tccaagactggacagacgagcacccgcggtgccaaaaccacggctggcggaagaggctcc
gttcaaagcgtttcaaggagttcggacccttcctcgtccgctggcccacccccgagaacg
aaatcggtaaacgaggaaggtgccacgctgctgtgggtggacaaataccgcccgtgctcg
ctgaaggccgtgatagggcagcaaggcgaccagagctgcgccaataagctgctgcgctgg
ctgcaaaactggtaccggcaccacggcggcggcggctccaaaccagcagtcagtagattg
ggaaagtttggggcaggaaaagatgacggctccggatgcaaagctgccctgctgtccgga
ccgccgggtgtggggaagaccacgacggcggcgctggtgtgcgaggagttgggtttcagc
tacgtggagatgaatgcgagttgcacgcgcagcaaaagcaacttgaaggaggtggtcgca
gagtccctgaacaacaccagcatcgagagcttctacaaaggcacttcccaaaaagtgagc
gccaaacacgtcttgatcatggacgaggtggacggcatggcgggcaacgaggaccgcggc
ggcgtgcaggaattgatcggcctcatcaagaattccaggattcccatcatctgcatgtgc
aacgatcggaaccaccagaagatccgatccttggccaattactgcttcgatctgcgcttt
cacaggccgcgactggagcagatcaagtcggctatgatgtccatcgctttcaaggaagga
atcaagattccgcccccggcgcttaacgagattatcttggcgtccaatcaagacatcaga
caggtgatccataacctcagcatgtggtcggccaaagacaaggcgatgacgtacgaccag
tgcaagtgcgacgccgccgccgcccgcaaggacctgaagttggggcccttcgacgtgtgc
cggaaggtgttcgccgccggcgaggagacggcgcacatgagcctcatcgacaagtccgat
ctcttcttccacgactactcgctcgcgcccctcttcgtccaggagaattacctccacgtt
cggcccgccgccgccggcggcgacgtcaagtcccaccttgtgctgctcagcaagacggcc
gactccatcggcgacggagacctggtggaccgacgcatccgctctggccagaactggtct
ctgctgcccacgcaggccatctacgccagcgtcatcccaggcgaactcatgcgagggtac
atgagccagttcccgtccttcccgagctggctgggcaagaactcgtcggcgggcaaacat
tggcgctgcgtccaggagctggcgtcgcacatggctttgaagacgacgagcggcgggcaa
gcggtcaacctggactacctgcacttcctgcggcaggccctgctcgacccgctgcagaag
ttggcggccgacggcgcccctctcgccgtgcggctgctggacgattaccagctggtccgg
gaggacgtggacggcatgatggagatgggctcctggggcgggaggcccgacccctactcc
agactggactccaaggtgaaggcggcgttcacgcgagcgtacaacaaggaggtccatctg
acgccgtactccctgcaagccgtcaagaaggggcggggcgccggcggcgaagagtccgaa
gcgggagtgcagggcgccgcgctctctgacgacgaggaggagggcgacgccctcagtgtg
gatgcgatgatcaaaaagaagaagaagaccaaagccaccaagagggagaagcctgacgat
tccgccaagtccaagtccaaggccaaggccaaggcgaaaaagtga
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