Syngnathoides biaculeatus (alligator pipefish): 133505629
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Entry
133505629 CDS
T09681
Name
(RefSeq) ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133505629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbia03041
]
133505629
03009 Ribosome biogenesis [BR:
sbia03009
]
133505629
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133505629
Spliceosome [BR:
sbia03041
]
Complex A
U2 snRNP components
U2 related factors
133505629
Complex B
133505629
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
133505629
Ribosome biogenesis [BR:
sbia03009
]
Eukaryotic type
90S particles
Helicases
133505629
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
DUF3915
Flavi_DEAD
Atrophin-1
AAA_25
nSTAND3
AAA_29
AAA_7
Motif
Other DBs
NCBI-GeneID:
133505629
NCBI-ProteinID:
XP_061684850
LinkDB
All DBs
Position
9:29784595..29808093
Genome browser
AA seq
763 aa
AA seq
DB search
MSKRHRLDLGDDYSSKKRSEGRDRDSDRDRGDHSRDRDRDRDRDRDRDRDREREMKSSSG
APKSMPAVIAMPQLKQMAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKENFTDIITR
HQSFVLVGETGSGKTTQIPQWCVDMVRSIPGPKRAVACTQPRRVAAMSVAQRVADEMDVM
LGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDIL
MGVLKEVVRQRADLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYL
EAAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTL
PPQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIR
VESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVL
QLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLA
KMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYH
AFKQNHEANQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRA
LCTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTD
IKPEWLVKIAPQYYEMSNFPQCEAKRQLERIVAKLESKEYSQY
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgtttggatttgggcgatgactactccagtaagaagaggtctgaa
gggcgtgacagagactctgatcgagaccgcggggatcattccagagacagggatagagac
cgggatcgagaccgtgacagggaccgagaccgtgaaagagagatgaagtcgtcaagtgga
gcacctaaaagcatgccagctgtcattgccatgcctcagttgaagcagatggccatgcag
cagcagatcaatccattcaccaacctgccgcacacgccccgctattatgaaattctgaag
aaaaggttacagcttcccgtatgggaatacaaggaaaacttcactgacatcatcacacgc
catcaaagctttgtccttgtcggagagactggctctgggaaaacgacacaaatccctcag
tggtgtgttgacatggtaaggagcattcctggtccgaagagggcggttgcctgtactcag
ccaaggagagtggcagccatgagcgtggcgcaaagagtggcagatgaaatggacgtgatg
ctcggacaagaagtgggctattccattcgatttgaagactgtagttctgccaaaaccata
ctgaagtacatgacagatggtatgttgttgagagaggcgatgaatgaccctcttctggag
cgttatggagtgattattctagacgaggcccacgagcgaacactagccaccgatattctg
atgggagtgctgaaggaggtggtgcgtcaacgagccgatctaaaggttatagttatgagt
gccacactggatgcagggaagttccaagtgtattttgacagttgtcccctgctgacaatt
cctggccgcacacacccggtagagatcttctacacacctgagccggagcgagactacctt
gaggccgccattcgcacagtcatccagattcacatgtgtgaagaagatgagggggattgt
cttctcttcctcactggtcaagaggaaattgatgaagcgtgcaaaagaataaagcgtgag
gtggatgaccttgggcccgaagttggagacatcaaaatcattccactgtattcaacgttg
ccaccacagcagcagcaaaggatttttgagccaccacccccacggaaacctaatggtgca
ataggaagaaaggttgtggtgtcaacaaacattgctgagacctctctaacaattgacggt
gttgtctttgtcattgatcctggctttgcaaaacagaaggtatacaaccctcgcatcaga
gtggaatcactgctggtcaccgccatcagtaaagcgtctgcccagcagagggcagggcga
gctggtagaacgcggccagggaaatgtttccgtctatatacagaaaaagcctacaaaaca
gagatgcaggataacacatacccagaaatcctgcgatccaacttggggtcagtggtactg
caactgaagaaattgggcatcgatgaccttgtgcactttgacttcatggatccaccagct
cccgagacactgatgagagccttggagctactcaactacttggctgcactcaacgacgat
ggtgacctgaccgagctgggctccatgatggcagaattccccctcgatccccagttggcc
aagatggtcatcgcaagctgcgagtttaactgctccaatgagatactttccatcactgcc
atgctgtcagtcccacagtgttttgtgcgccccacggaggcaaagaaggctgccgatgag
tccaagatgaggttcgcccacatcgacggcgaccacttgactctgctcaatgtctaccac
gccttcaagcaaaatcacgaggcaaaccagtggtgctatgacaactttgtcaactatcgc
tcgctgatgtctgccgacaacgtgcggcagcagctgtctaggatcatggaccgtttcaac
ctaccccgccggagcacagaattcactagtcgagactactacatcaacatccgcagggcg
ctatgcaccggattcttcatgcaggtggctcatctggaacgaaccggtcattacctcaca
gttaaagacaaccaagtggtccaactgcacccatccacagttttggaccacaagcccgaa
tgggtgctctacaacgaatttgtcctcaccaccaaaaactacattcgcacttgcacagac
atcaaacccgagtggctggtgaagatcgccccccagtactatgagatgagtaacttccct
caatgtgaagctaaacgacagctggagcgaatcgttgccaaactagagagcaaagagtat
tcccagtactaa
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