Syngnathoides biaculeatus (alligator pipefish): 133505740
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Entry
133505740 CDS
T09681
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133505740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbia03041
]
133505740
03009 Ribosome biogenesis [BR:
sbia03009
]
133505740
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133505740
Spliceosome [BR:
sbia03041
]
Complex A
U1 snRNP components
U1 related factors
133505740
Complex B
133505740
Ribosome biogenesis [BR:
sbia03009
]
Eukaryotic type
Pre-60S particles
Helicases
133505740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
133505740
NCBI-ProteinID:
XP_061685146
LinkDB
All DBs
Position
9:complement(30219643..30248284)
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AA seq
633 aa
AA seq
DB search
MPGFSDRDRGRDRAYGEGPPRFGGGGGGRGGPPPPKFGNPGDRLRKRHWNLDELPKFQKN
FYQEHPDVTRRPVQEVEQYRRSKEVTVNGRECPKPIIRFHEAAFPNYVMDVIVKQNWIEP
TPIQGQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASHLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDY
VQINIGALQLSANHNILQIVDVCNDIEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDEI
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAED
RGGRGRGGRGGYKDDRRDRYSGGGRRENFGGGGYRDRENDRGFGNGPKGGFGGKMQNGGT
YGGNGANSSGSYGNNYSNSNGPGNFGPPSNQVGAFGNQKFQGPSQFGGMQRPVQNGMNHP
FPYTPQPPPPPQTQQPPPPRPMVPYPMPPHFSQ
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgccgggattttcagacagagaccgtggccgagatagagcatatggtgagggacctcct
cgttttggaggtggaggaggaggcaggggaggaccgcccccgccaaagtttggcaaccct
ggagacaggctaagaaagaggcactggaaccttgatgagcttcctaagtttcaaaaaaac
ttctaccaggaacatccagatgtcacccgaagaccagttcaagaggttgagcagtacaga
cgaagcaaagaagttacagtcaatggcagagaatgccccaaaccaattataaggttccat
gaagcggcatttccaaactacgtcatggatgtgatcgtcaaacaaaactggatcgaacca
acccctattcagggtcaggggtggccagttgctcttagtggcaaagacatggttggcatt
gcgcaaaccggctctgggaaaactcttgcttaccttctacctgctattgtgcacatccaa
catcaacccttcctggagcatggtgatggaccaatttgcttggtattggcacctacacgt
gagttggcccagcaggtgcaacaggtcgctgctgaatacggcagggcctctcatctcaaa
accacctgcatctatgggggtgcacccaaaggaccccaaattagggatctcgagagggga
gttgagatttgtatcgctaccccgggtcgtctcattgactttctggagtgtggcaaaaca
aatttgcgacgttgcacctacctggtgcttgatgaggccgaccgcatgctcgacatggga
tttgaaccacaaatccgcaagattgtggaccaaatacggccagaccgtcagactctgatg
tggagcgccacttggcccaaagaagttcggcagcttgcggaggacttcctgaaagactat
gtacagatcaacattggagcgcttcagcttagcgctaaccataatatcttgcagattgtt
gatgtttgcaatgacatagagaaggaggacaaactgattcgattgcttgaggagataatg
agtgaaaaagagaacaagacaattatttttgtagagacaaaaaggcggtgtgatgagatc
accaggagaatgagaagggatgggtggccagcgatgggaatacatggagacaagagccag
caggagagggactgggtccttaatgagttcagatacggcaaagcaccaatcctcatcgcc
acagatgtggcctcccgaggcttagatgtggaggatgtgaaatttgtcatcaattatgac
taccctaactcctctgaggactatatccaccgcattggacgcacagcccggagtcaaaaa
acgggcactgcctacaccttcttcacccccaacaacatgaaacaggctagtgacctgatc
tctgtgttgcgtgaagccaaccaggccattaaccctaagcttatccagatggcagaggac
agaggaggtcgtggaagggggggacgaggtggctacaaagatgaccgtcgagataggtat
tctggaggtgggcggcgtgagaactttggtggtggcggctacagggacagggaaaacgat
agagggtttggaaatgggccgaagggtggttttggaggaaagatgcaaaatgggggcacc
tatggaggcaacggtgctaattctagtggtagttatggcaacaattatagcaacagcaat
ggcccaggaaactttggtcctccatccaatcaggtgggagctttcgggaaccaaaagttc
cagggcccctctcaatttgggggcatgcagaggcctgtccagaatggcatgaaccacccg
tttccatacacccctcagccaccaccaccgccacagactcaacagccaccacccccacgt
ccaatggtaccctacccaatgccaccacacttttcacagtaa
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