Syngnathoides biaculeatus (alligator pipefish): 133505906
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Entry
133505906 CDS
T09681
Symbol
exosc9
Name
(RefSeq) exosome complex component RRP45
KO
K03678
exosome complex component RRP45
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133505906 (exosc9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133505906 (exosc9)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133505906 (exosc9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
133505906
NCBI-ProteinID:
XP_061685425
LinkDB
All DBs
Position
9:complement(6832307..6841214)
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AA seq
429 aa
AA seq
DB search
MKETPLSNCERDFLLTAIREKKRLDGRQTYDYRKIKVMFGTDFGCCFVELGKTRVMAQVS
CELVAPKENRPNEGMMFFNIELSPMASPAFEQGRQSELSVKLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRVDVHTLNHEGNLMDAASIAAIAALCHFRRPDVGIHGDEVTVYSAEER
DPIPLSVYHMPISVSFAFFQQGTYLLVDPSEREERVMDGLLIIAMNKHREICSIQSSGGI
MLLKEQVMRCSKIASVKVSEITELITRALENDNTARKGGGRCGFAESMPQERITALKKEE
TSVEMPDATERANDIVLETEVPLQTSQSPVVLLPGMGQVGQGLENSWGIAEDEQDEEEDV
NSDEDKETMMEAADKQQAQPTQRDVVEISDSEEDEVVILQPETPVKVHKNTSSRSHQKGP
VASKKRPKK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagacacctttgtcaaattgtgagagggatttcttgcttacggccatccgagag
aaaaagcgcctggatggacgacagacttatgactacaggaaaatcaaggtcatgtttggg
actgactttggatgctgcttcgtggaactgggcaagaccagggtaatggcccaggtatcc
tgtgagttggtggctcctaaagagaacagaccaaatgagggaatgatgttcttcaatatt
gagctgtcgcccatggcgtcaccagcatttgaacagggaaggcagtcagagttgtcggtg
aagctaaaccgacagctggagcgatgcttaaggaattccaagtgcatcgatacggagtcc
ttgtgtgtggtatccggagaaaaggtgtggcaaattcgggtggatgtacacacgctgaat
catgaagggaacctaatggatgccgccagtatcgccgcgatcgctgccctttgccacttc
agacggcctgatgtcggcatccatggggatgaagtcactgtgtatagtgcagaagaacga
gatcccatccctcttagtgtctaccacatgcccatcagtgtcagctttgcctttttccag
caaggaacttatctgcttgtcgatccaagtgaacgggaggagcgtgtgatggatggcttg
ctgataattgcaatgaacaagcacagagaaatctgctccatccagtcgagtggtggcatc
atgttgctcaaagagcaggtaatgagatgcagtaaaatagccagcgtcaaagtttccgaa
atcacagaactcatcactagagccctggagaatgacaacaccgcccggaagggaggtggc
agatgtggctttgccgaatccatgccacaagagcgaatcaccgctctaaaaaaggaggag
acatcagtcgaaatgccagatgcgacagaaagagccaatgacattgtcctggagaccgaa
gtccctcttcagacaagtcagtccccggtggtactgctcccaggcatgggccaggtcggc
caagggcttgagaacagctgggggatcgctgaagacgaacaggacgaagaggaagatgtc
aacagtgatgaagacaaagaaacaatgatggaagcggcagacaaacagcaagcccagcct
acacaaagagatgtggtggagatatccgacagtgaagaggatgaagttgtcatacttcaa
ccagagacaccagtcaaagttcataagaatacaagttcacgttcccaccagaaggggcca
gtggcatcaaagaaacggcccaaaaaatga
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