Syngnathoides biaculeatus (alligator pipefish): 133505947
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Entry
133505947 CDS
T09681
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbia04147
]
133505947
00535 Proteoglycans [BR:
sbia00535
]
133505947
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133505947
Exosome [BR:
sbia04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
133505947
Proteoglycans [BR:
sbia00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
133505947
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133505947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
133505947
NCBI-ProteinID:
XP_061685519
LinkDB
All DBs
Position
2:complement(7161244..7192320)
Genome browser
AA seq
1602 aa
AA seq
DB search
MLRILLLILCVGGLEAWFWNFAPKATSQSTTSAATTPSGTTQVQEEEEDLLGSGGEIVNL
TTGTGNLVKVWNVTTTPGNTQGSVEVESADSNITGNINGLRVVSGEEGSGVWESDASGSG
SGSRQDLGSAVESVSIHPSNFSDANNGTGGAGSDPLCLAVPSVWHMCSRKRPQFFKLPNF
FNHTSVEQVGAALREWERLTPAGCHQRIEWFLCLLLVPRCPSPTTTLLRLPCRSFCYQVQ
DSCWTSLDSAHLPVECGLLLDEAQEPGGPPCVSVSYSKDQSSLSLLQLIGDPPPDEIGRV
IGPSGTPAYVFTSATVSGQPALAYLPNPFYRHFSLLFHIKPSTSSASVLFSITDGPQRLM
YVAVKLSAVQLGRQWVQFFYTEPDSEAPYEAASFDVPSMVGKWTRFSLSVFEEQVTFYQD
CDGAPQMVDFERSPDPMELDPGAGVFVAQAGGADLDKFQGEIAELRLVGNSRAAERLCDD
IDDDSDVASGDFGSGDGSRRQTGSNVKTTPASFRPVPEPPLIASKGGRLKETVLSGAKGE
KGDRGEKGTRGDRGHAGPKGDPGSGFPSPAGGVGQKGEKGDKGSTTFGSKGERGAQGLPG
PRGPPGAAAEVVRIGDGSLRQEVAGPAGSPGRDGLPGPPGADGAPGDPGEDGKAGPPGPQ
GFPGTPGSPGSKGEKGETGFGQPGPRGPPGLPGPPGPATGHHPTFVDMEEGSGFPEWEKI
RGLVGPPGPPGPPGPPGVPGTSVALGSNGPVAFGPPGSPGRDGTPGRPGPPGDRGLPGQP
GLRGEKGDCGELNSQGRAGEKGSRGDPGLPGTPGQTGLAGLPGPMGPTGPPGRPGPPGPP
HPFGSADQEDFLANSGLPGLSGQPGPQGPPGISGLPGKPGFPGTNGDKGAEGPRGPPGIP
GLDGFPGHLGEKGARGEKGEQGLPGRDAGPPGPPGPPGPPGRIIYRNGDTGAGIPGQDGF
PGPIGPKGEKGDTGLPGFAPKGEKGEPGVIMGPDGRPLYLGGLTGKPGDIGPPGPVGPPG
TYGPQGQKGEIGLPGRPGRPGLNGIQGQKGEPGDRSGATYYGPPGPPGPPGPPGPPSRGN
EDYSGYYQATKGEKGDTGAPGLPGRLGGGSDLDFYAFKNELKGETGDPGLKGEKGEPGGG
YYDPRYGASGPGVPGVPGPPGPKGDSIAGPPGPQGPPGPPGRGYDGRPGPPGPPGPPGVP
SFPGPHRGTQTISIPGPPGPPGIPGIPGHSSRVTVLQSYDIMTATARRHPEGSLVYVIDR
TDLYLRVRDGVRQVQLGGYIPLPREDANEVVAAEPPPVVAYTQHHVSNDSHSQAERPDQV
NPDSFSQPDPRQSSQLYPPYQTNPEGRNQHHPDPRYDTDTRHTAQPDPRYPAPTDPRYPS
YTDRVNNPDGRNPVHPAHEHPPYYAVTPQRRPPPPVPQTPPHHHTSGPGLHLIALNQPQT
GSMRGIRGADFLCFTQAQSIGMKGTFRAFLSSQLQDLHSIVRKADRENMPIVNLKDEVLF
DNWDAIFNDGTMKQNVPIYSFDGKDVLRDSIWPEKMMWHGSTANGQRQVDGFCESWRMSS
HILTGKASPLHSGNLLRQTPSSCSSSYIVLCVENSYIGYGRK
NT seq
4809 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggatcctgctcctgattctgtgtgttgggggcctggaggcctggttctggaac
tttgcccccaaggccaccagccagtccacaacaagtgctgccacaacaccgagtgggaca
acacaggtgcaagaggaggaggaggatttgttaggctctggaggagaaatcgtcaacttg
accactggaaccggtaacttggtgaaggtgtggaatgtgaccaccactccagggaatact
caaggttccgtggaggtggagagcgctgactcaaacattacgggtaatattaacgggctc
cgagtggtgagtggggaggaagggtctggagtttgggaaagtgatgcttctgggtcggga
tcggggtccaggcaagatcttggatcagctgtggaatcagtcagcatccatccaagtaac
tttagcgatgcaaacaacgggactggaggtgctggttctgacccactttgtctggccgtg
ccctctgtttggcacatgtgctccagaaaacggccgcagttcttcaaattacctaatttt
ttcaaccatacgtcagtggagcaggtgggggcggccttacgggagtgggagcggctgacc
ccggcgggctgtcaccagcgcatagagtggttcctgtgcctcttgctggtgcccaggtgc
ccctcgcccaccaccacacttttgcgtctgccctgccgcagcttttgctaccaagtgcag
gacagctgctggacgtcgctggacagtgcgcatcttccggtggagtgcggcctcctgctt
gatgaggcgcaggagcctggggggcctccatgtgtgtctgttagttactccaaagaccag
agcagcctgtccctactccagttaattggagatccgccacctgatgagatcggtcgggtc
atcggccccagcgggaccccggcctacgtcttcacttccgccactgtgtcgggccaaccg
gctctggcctacctccccaaccctttctaccgccacttctccctcctctttcacatcaag
ccttccacttcgtcggcctccgtcctcttctccatcaccgatgggccccagaggttgatg
tacgtggcggtcaagctcagcgccgtgcagttgggacggcaatgggtgcagtttttctac
acagagccagattcggaggcaccatacgaggccgccagcttcgatgtgccgagcatggtc
ggcaaatggacccgtttctcgttgtctgtgtttgaggagcaagtgaccttctaccaggac
tgtgatggggcgccacagatggtggactttgagcgctctccggacccaatggagcttgac
ccaggggccggggtctttgtcgctcaggccgggggggcagacctggacaagttccagggt
gaaatagctgagctgagacttgtgggaaattctcgggcagccgagcgcttatgtgacgac
atcgacgacgactccgacgttgcctctggtgactttggcagcggtgacggcagcaggagg
cagacaggaagcaatgtaaagaccacacctgcatctttcaggccggtacccgagccccca
ctgatagcctcaaaaggagggagactaaaagaaacggttttaagtggcgcaaaaggagag
aaaggggacagaggagagaagggcacccgaggggacagaggtcatgcggggccaaagggg
gaccctggttcaggcttcccctcaccagctggaggtgttggacaaaagggagaaaagggt
gataagggtagtacaacctttggaagtaagggggagcgcggcgcacaggggctcccaggt
ccccgcggacctcctggagctgcagctgaggtagttcggattggggatggctctttgagg
caggaggtggccggacccgccggatctccgggccgagatggattgcctggaccaccagga
gccgatggtgcacctggagatccaggagaggatgggaaagctggtcccccagggccacaa
ggattcccaggaactcctggaagtcctggttccaaaggagaaaagggtgagacgggcttt
ggtcaacctggacccagaggtcccccagggcttccaggacctcctggaccagcaactgga
catcatccaacgtttgttgacatggaggaggggtcaggattcccagaatgggagaagatc
cggggtcttgttggtcctccaggccctccaggccctcctggccctcctggggtccctggt
acatcagttgcacttggatccaatggtccagttgcctttggacctcctggatcacctgga
agggatgggaccccaggtcgacctggtcctcccggggatcgtggtctaccaggtcaaccc
gggctcaggggagaaaagggcgactgcggtgagctcaactctcagggaagagctggtgag
aagggttctcgtggtgacccaggacttccgggaacaccaggacagactggactagctggg
cttcctggtcccatgggcccaactggacccccaggtcgaccagggccacctgggccgcca
cacccctttggctctgctgaccaggaagattttttagcaaacagtggcttaccgggactc
agtggccaaccaggaccacagggtcctccaggtatctcaggtttaccgggcaaaccgggt
tttccaggaaccaatggtgacaaaggagcagaaggaccaagaggtccacctggaattcca
ggcctggatggatttccaggacacctgggggagaagggagctcgaggagagaagggggaa
caaggtctgccagggcgcgacgctgggccaccgggacctccagggcctccaggacctcca
ggacggatcatttatcggaatggggatacgggagcaggaattccaggccaagatggattc
cctgggcccatcggaccgaaaggggaaaagggggacacggggcttccaggatttgccccc
aagggtgaaaaaggagagcccggtgtcatcatgggtccggatggccgccctttgtacctg
ggggggctgacagggaaaccaggcgatataggacccccaggcccagttggacctccaggc
acttatggtcctcaaggtcaaaaaggagaaattggacttccaggtagaccaggtcgaccg
gggctgaacggcatccaaggacaaaaaggagagccgggcgacaggtctggagccacatac
tatggtcccccaggtccaccgggcccacctggaccccctggaccaccgtccagaggcaat
gaggactactccgggtattatcaggcgactaaaggagagaaaggtgacactggagcacca
ggtctacctggccgactaggtggtgggtcagatttggacttttatgcatttaagaatgag
ttgaagggagagacgggagatcccggcttgaaaggagagaaaggagaaccgggtggggga
tattacgacccgcgatatggagcgagtggacccggagtgccgggagtccctggtcctcca
ggccccaaaggggactccattgccgggccaccgggtccccaagggccaccaggtccacca
ggaagaggctatgatggcagacctggaccacccgggccacctggaccccctggagttcct
tccttccctggacctcacaggggcacacaaactataagtattcctggaccacccgggcca
ccaggaatacctggaataccaggacattcttccagggtgacagtgttgcaatcctatgac
atcatgacagccactgctagaagacatcctgagggctcgctggtctacgtcatagaccgg
accgatctttatctacgagtcagagatggggttcgtcaagtccagcttgggggctatatt
ccattgccacgtgaggatgctaatgaggttgtagctgcggagcccccaccggtcgttgca
tacacccaacaccacgtctccaatgactctcacagtcaagcggagaggccggaccaagtt
aatccggacagcttttctcagcctgatccacgtcagtccagccagctgtaccctccatac
caaacaaaccctgagggcagaaaccaacaccatcctgatcccagatacgacactgacact
cgacatacagctcagccagatccgcgataccccgcaccaacagaccccagataccccagt
tacacagaccgtgtgaataacccagatggtcgaaaccccgttcatccagcccatgaacac
ccaccttactatgctgtaactcctcagcgaagaccccctccacctgtgccccagactcca
ccccaccatcacacatcaggtccagggctccaccttatcgccttgaaccaaccccagact
ggatccatgcggggcatccggggtgccgattttctgtgctttacccaggctcaaagcatc
ggaatgaagggaacattccgagccttcttgtcctcccaactccaagatctccacagcatt
gtccgcaaagccgacagagaaaatatgcctatagtcaacttgaaggatgaggttttgttt
gacaactgggatgccatttttaacgatggcacaatgaagcagaatgtcccaatctactct
tttgatggtaaagatgttctccgcgacagcatctggcccgaaaagatgatgtggcacggt
tccacggccaatggtcagcggcaggttgacggtttctgcgagtcgtggcgcatgagcagc
cacatcctgaccggcaaggcctccccgctgcacagcggcaatctgctccggcagaccccc
agcagctgctccagctcctacatagtgctgtgtgtggagaacagctatattggctatggc
aggaaataa
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integrated database retrieval system
