KEGG   Syngnathoides biaculeatus (alligator pipefish): 133506300
Entry
133506300         CDS       T09681                                 
Symbol
lsm6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
sbia  Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018  RNA degradation
sbia03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sbia00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133506300 (lsm6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133506300 (lsm6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbia03019]
    133506300 (lsm6)
   03041 Spliceosome [BR:sbia03041]
    133506300 (lsm6)
Messenger RNA biogenesis [BR:sbia03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     133506300 (lsm6)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     133506300 (lsm6)
Spliceosome [BR:sbia03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    133506300 (lsm6)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 133506300
NCBI-ProteinID: XP_061686292
LinkDB
Position
9:12193071..12194404
AA seq 80 aa
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKY
GDAFLRGNNVLYISTQKRKV
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtctcagaaagcagacgcccagtgacttcttgaagcagatcattgggaggccggtg
gtggtcaagctgaactccggtgtcgattaccgaggtgtcctggcctgcctggatggttac
atgaacatcgccatagagcagacggaggagtatgtcaacgggcagctcaagaacaaatat
ggggacgcctttctaagaggaaacaatgttctttacatcagcacacagaagaggaaagtt
tag

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