Syngnathoides biaculeatus (alligator pipefish): 133506433
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Entry
133506433 CDS
T09681
Symbol
pdgfba
Name
(RefSeq) platelet-derived growth factor beta polypeptide a isoform X1
KO
K17386
platelet-derived growth factor subunit B
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04010
MAPK signaling pathway
sbia04020
Calcium signaling pathway
sbia04510
Focal adhesion
sbia04540
Gap junction
sbia04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
133506433 (pdgfba)
04020 Calcium signaling pathway
133506433 (pdgfba)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133506433 (pdgfba)
04540 Gap junction
133506433 (pdgfba)
09142 Cell motility
04810 Regulation of actin cytoskeleton
133506433 (pdgfba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
sbia04052
]
133506433 (pdgfba)
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133506433 (pdgfba)
Cytokines and neuropeptides [BR:
sbia04052
]
Cytokines
Growth factors (RTK binding)
133506433 (pdgfba)
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Growth factors/receptors
133506433 (pdgfba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDGF
PDGF_N
Motif
Other DBs
NCBI-GeneID:
133506433
NCBI-ProteinID:
XP_061686551
LinkDB
All DBs
Position
9:complement(15641784..15663238)
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AA seq
470 aa
AA seq
DB search
MRSWWLLLLLLLLLLFPRLGGAEGEPLPASLVDLVRNSAISSVDELKLLLRREAGAVEDD
HHDGALTNQTHGRHIRSIVEVEQAQQAACRVRTEVMEVTRSMVDRRNANFLLWPRCVEVQ
RCSGCCNSRVMQCLPTVTSSRYLQVTKIQYSNGKAFYEKAIISVEDHLACRCQEPSPDPA
PFTPPSHPHPSLPRAAHPAPPKPLGSKADLHRNDDLKRNQRVYDSEEQEPAARRWPQGGY
TQLVRWTHQRQHQSADGWPSDAGANRGVTGNPPQVVPGSGHGGGREEGGEVRRQQFPSRS
YDHGESENRNLRTQHRLNAPQSDNAPLPDPTPSQQSPTAVSRISTNHRDSVTSRTNVEVT
PTRQRTQAERQTGNGRRDGEPADQGGAKDLTLANRGGLLTEEERRQKVLEVVQGELDRAA
HLQPQLRPKLALATAAPPSRRQTPFRPASPRRRRKHRKRISKEAMRAMIM
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcgtggtggcttttgctgctgctgctgttgctgctgctcttcccgaggctcggc
ggcgctgagggcgagccgctccccgcgtcgctggtcgacctggtgaggaactcggcgatc
tcctccgtggacgagctgaagctgctgctgcggcgagaggcgggcgcagtagaagacgat
catcatgacggcgctctcacaaaccaaacacacggacgacacatcagaagcatcgtggag
gtcgagcaggcccagcaggcggcgtgcagagttcggaccgaggtgatggaggtgaccagg
tccatggtggaccgtcgcaacgctaacttcctgctgtggccgcgctgcgtggaggtacag
cgatgttcggggtgctgcaactctcgggtgatgcagtgtctacctaccgtcacctccagc
agatacctgcaggtgacaaagatccagtacagcaacgggaaggccttctacgagaaagcc
atcatctcggtggaggaccacttggcgtgcaggtgtcaggagccctcgcccgacccggcg
ccgttcaccccgccgtcccaccctcacccgtctctcccccgggcggctcacccggctccg
ccgaagcccctcggctccaaggccgacctccaccgcaacgacgacctgaaacgcaaccag
cgggtctacgacagcgaggagcaggagccggcggcgaggcggtggccgcagggggggtac
acgcagctggtgcgctggacgcaccagaggcaacaccagtcggccgacggctggccgtcg
gacgcgggggcgaaccgcggcgtaacgggaaacccgccgcaggttgtcccggggagcgga
cacgggggcggtcgcgaggaaggaggcgaagtgcgtcgtcagcagttcccttcccgaagc
tacgaccacggagagtctgagaatcgcaatctcaggacgcaacatcgactcaatgccccc
cagtcggacaacgcaccccttcccgatccgaccccgtcgcaacaaagccccaccgctgtt
tcgcgcatttccaccaaccacagagactcggtgaccagccggaccaacgttgaggtgacg
ccgacgcgccagaggacgcaagcggagcgccaaacggggaacgggaggcgggacggcgag
ccggccgatcagggcggggcaaaggacttgacgctggccaatcgtggaggtctgctcaca
gaagaggagaggaggcagaaggttctggaagtggttcaaggggagctagaccgagccgct
catcttcaacctcagctaagacctaaactagcgctcgcgacggcggccccgccctccaga
cgccagaccccgttcaggccggcgtccccccgtcgtaggaggaaacatcgcaaacgcatc
agcaaggaggccatgcgagccatgatcatgtag
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