Syngnathoides biaculeatus (alligator pipefish): 133506444
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Entry
133506444 CDS
T09681
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133506444 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133506444 (fip1l1b)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133506444 (fip1l1b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
133506444
NCBI-ProteinID:
XP_061686564
LinkDB
All DBs
Position
9:complement(19748768..19758464)
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AA seq
577 aa
AA seq
DB search
MSAGDEADKTATTDASAGDEEEEWLYGDETESKEEEEAVKPTGADSAPAEAPTEEGGEHA
TGNGVASESQATEDAMGDDAESDSDSDDDDDDVRVTIGDIKTGAPQYTPYGAPPVNLNIK
TPGSRPYGQVPTKVKGVDLDAPGNINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNE
DTWKAYCEKQKRLRMGLEVSAVGSATSKITVQQGRTGNDKEIPSLAVHTSKSDFTSPVSL
YKSSSSQVARISTPQWTGLPIPDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNLEGNNI
QVISERSTSDGDSAPAKMPAFFPPGPLPPNVPPPPFLPPPPNVSSAPPLIPPPRLPITVP
PPGFPPLPSGPPPSIIPTMDSHGGGYDGRSIPPYPFPQGAYPPPMSGGVPASWPPMMDNA
KPWDYYSRRDDKRDKERERPRERTHERERERERDRERERERDHSPSVIGYTSEEERYRYR
EYQERGYADRHRERASREKEDRHRERRHREKDEGRHKSSRSSSSRRRHDSEEADSHRRHK
HKKNKRNKEGKEASEDIGADQENQEAMEREREKWKPR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccggcgacgaagcggacaaaacggccaccaccgatgctagcgctggtgacgag
gaggaggaatggctgtacggagatgaaacggagagcaaagaagaggaagaagcagtcaaa
ccgactggtgctgacagtgctcccgctgaggccccgactgaggaaggtggtgaacacgcc
acaggaaacggcgtggcgtccgagtcacaggccaccgaggacgctatgggcgacgatgca
gaaagcgacagtgacagcgatgacgacgacgacgacgtccgcgtcaccattggagacatt
aaaaccggcgccccgcaatacacaccgtacggtgcgccacccgtcaatctcaacattaaa
acacctggctccagaccttacggacaagttcccacgaaggtgaaaggggtcgatctcgat
gctcctggtaacataaatggcgtccctgtgctggaagtggatatggagtcatttgaggag
aagccctggaggaaaccgggggcggatttgtccgactacttcaactacggctttaacgaa
gacacatggaaggcttactgtgaaaaacagaagcgactgcgcatgggcctggaagtgtcc
gccgtaggctcggcgacgagtaaaatcaccgtccaacaggggcggacaggcaacgacaaa
gagatccccagcctggcagttcacacttccaaatccgacttcacctccccggtcagcctg
tacaagtcttccagcagtcaggtcgccaggatctccacccctcagtggactggcctgcca
atcccggatatgtcctattatacgaagacgagcggtaccatcgatgtgatcggcggaggg
accgccaccatcagcagggtggaagggcgacgccggcacaacctcgagggcaataacatc
caggtcatctctgaacgttccacatcagacggcgattccgcccccgcgaagatgcccgcc
ttctttccccctggaccgctgcctccgaacgtgcccccgccccctttcctcccgcctccg
cccaacgtcagctcggctcccccgctcatcccgccgccccggttgcccatcaccgtcccc
ccgcctgggtttcctcctctgcctagcggtcccccgccttcaatcattcccacgatggac
agccacggtggaggttacgacggacgctctatccccccgtaccccttccctcaaggggcc
taccctccccccatgtccggaggcgtgcctgcatcctggcccccgatgatggacaacgcc
aaaccgtgggactactattcccgtcgggacgacaagcgagacaaggagcgagagcgtccc
cgagagaggacgcacgagcgtgagcgcgagagggagcgagatcgggagcgggagcgagag
cgagatcacagcccctcggtcatcggatacaccagcgaggaggagcgttatcgctatcgc
gagtaccaggaacgcggttatgcggaccgccatcgcgagcgagcgagccgcgagaaggag
gaccgacaccgggagaggcggcatcgggagaaagacgaggggcgccacaagtcgtctcgc
agcagcagcagcaggaggcggcacgacagcgaggaggccgacagccaccgaaggcacaag
cacaagaaaaacaagcggaacaaggagggcaaagaggccagcgaggacatcggcgcagac
caagagaaccaggaggccatggaacgagagagagaaaaatggaagccacggtga
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