KEGG   Syngnathoides biaculeatus (alligator pipefish): 133506603
Entry
133506603         CDS       T09681                                 
Symbol
smu1b
Name
(RefSeq) WD40 repeat-containing protein SMU1 isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
sbia  Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:sbia00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sbia03041]
    133506603 (smu1b)
Spliceosome [BR:sbia03041]
 Complex B
  Other components
   Complex B specific factors
    133506603 (smu1b)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st LisH_TPL WDR90_beta-prop_4th Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Ge1_WD40 Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_VPS8 Beta-prop_EIPR1 Beta-prop_IP5PC_F Mala_s_1-like DUF7165 VPS8_N LisH Beta-prop_WDR11_2nd CXCXC Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 133506603
NCBI-ProteinID: XP_061686877
LinkDB
Position
9:complement(29626433..29637565)
AA seq 588 aa
MMAQRHRHVFVRKNVWMCRNASGRMAGVQSQGSGLLLEDEKHVQWAGLGGAAARGFDELP
VAAHSSQSVPASAGDKLSMAVEMEPSDVIRLIMQYLKENNLYRTLSTLQEETTVSLNTVE
SIDSFIADIQRGHWDSVLLAIESLKLPDNTLIDLYEQVVTELIEMREVGAARSLLRQTDP
MIMLKQTQPERHSHLEHLLTLSYFDPREAYPKGSSKEKRRRAIAEELVREVSVVPPSRLM
GLLEEVGSLRLNTPESLSPEMTIETLSNKDRHAEKETCPTQLYRHIKFGRRSHVECARFS
PDGKYLISGSVDGFIEVWNFHTGNISKDLKYQAQDSFMMMDDAVLCMSFSQDSDLLATGA
QNGKIKVWKIQSGLCLRRFEHAHNKGVTSLSFSKDSNQILSASFDHTIRVHELRSGQTLK
ELNGHLSFVNDASFTQDGFHIISASSDGTVKIWNSQTCECIHTYKSLSGASDVPVNNVTV
LPQNPQFFVVCNHSSTVVVMNTQGQTVKTFSGGKKLGAKFVCCTVSPQGEWIYCVGEDLV
LYCFNYVTARLEKTLTVHEKDVIGITHHPHENLIATYSEDGLLRLWKP
NT seq 1767 nt   +upstreamnt  +downstreamnt
atgatggcgcagcgtcaccgccacgtgttcgtccggaaaaatgtttggatgtgtcggaat
gcgtcggggaggatggcgggggtgcagtcacaaggttccggactgttgctggaagacgag
aaacacgtgcagtgggcgggcctcggcggagcagcagcacgtggctttgacgagctccca
gtcgccgctcactccagtcagtctgttcccgcatctgcaggagacaagctcagcatggct
gtggagatggagccttcggatgtaatccgcctgataatgcaatacctaaaggagaacaac
ctctacagaacattgagtacgttacaggaagaaacaacagtgtcgctcaacactgtggaa
agcatcgacagcttcatcgcagacatccaacgtggacactgggactcggtcttgctagca
attgaatcgctcaaactgcccgacaacacactcattgacctttatgaacaggtggtgacg
gagctgatcgaaatgagggaggtgggcgccgcccgttcactcctcagacaaaccgacccg
atgatcatgttgaagcagacccagcccgagaggcacagccacctggaacacctgctcaca
ctctcctactttgacccgcgtgaggcatacccaaaaggcagcagcaaggagaagcgacgc
agggccatcgcagaggagctggtaagggaggtcagcgtggtgccgccgtcacgcctcatg
ggccttctggaagaagttggttcattgagactgaacacaccggagagtctctcacctgaa
atgaccattgagactctgagcaacaaggacagacatgcagagaaagagacttgtccgacc
cagttgtaccgtcacattaagtttggacggcggtcacacgtggaatgcgctcgattctcc
cccgatggcaagtacttaatctctggctcggtggacggcttcattgaagtgtggaacttc
cacacaggcaacataagcaaggatttaaagtaccaggcccaagacagcttcatgatgatg
gatgatgcagtattgtgtatgtccttcagccaggattcagatttactcgccactggagct
cagaatggaaaaataaaggtgtggaaaatccagagtggcctgtgcctgcgcaggtttgaa
cacgcgcacaacaaaggtgtgacctcgttgagtttctccaaggacagcaaccaaatcctc
agtgcatcttttgaccacaccatcagggtccatgagctgcgctcgggccagacactgaaa
gagttaaatggacatctatcgtttgtgaacgatgcatctttcactcaagacggctttcac
atcatcagtgcatcgtcggatggaaccgtcaagatttggaacagccaaacttgtgaatgc
atccacacgtacaaatctctctcgggggcttcggatgtccccgtgaacaacgtgacggtt
cttccccaaaatccgcagttctttgtggtttgcaaccactccagcacggtcgttgtcatg
aacacacagggtcagactgtcaagacattcagcggaggtaaaaagttgggagcaaagttt
gtgtgctgcaccgtgtccccccaaggcgagtggatttactgtgtaggagaagatttggtg
ctctactgcttcaactacgtgacagcaaggctggagaaaactctgacggtccatgagaaa
gacgtaattggcatcactcaccacccacacgagaatctgattgctacttacagcgaagat
ggcctcctgagactgtggaagccttag

DBGET integrated database retrieval system