Syngnathoides biaculeatus (alligator pipefish): 133506759
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Entry
133506759 CDS
T09681
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04510
Focal adhesion
sbia04512
ECM-receptor interaction
sbia04518
Integrin signaling
sbia04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133506759 (col9a1a)
04518 Integrin signaling
133506759 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133506759 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133506759 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sbia00535
]
133506759 (col9a1a)
Proteoglycans [BR:
sbia00535
]
Extracellular matrix (ECM) proteoglycans
Others
133506759 (col9a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
133506759
NCBI-ProteinID:
XP_061687184
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All DBs
Position
9:complement(9340591..9359349)
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AA seq
685 aa
AA seq
DB search
MDLSRSSRLLLLLQALLIASAQRGPVGPRGPPGPPGIAGVPGVDGIDGERGVDSRVNGGP
GATGDNGKDGAPGASGLPGADGPVGPPGDRGVAGVKGQKGDSGPPGPAGEPGVGPDGLDG
IPGTDGLPGEMGKVGPPGARGKRGQVGASGAVGPRGPPGVYQGQELCPSACPAGLSGHSG
LPGMKGHKGVKGESGEPGRQGHKGEEGEQGLQGDVGSQGLPGPAGTKGLAGIKGSKGERG
PRGKSGDLGPQGRQGAPGEIGQRGAIGETGPGGVQGDRGPSGIRGPPGPKGEPGLPGPDG
REGIPGLPGSKGLPGKNGAPGDAGLQGLPGVPGSYGQKGVSGPKGVSGDPGVAGMMGSPG
KQGERGDQGEVGPIGPRGGPGERGERGPTGPVGAPGGRGSKGDVGLPGLPGPAGYRGQKG
ERGAVGLDGPKGEQGPAGTEGTPGHRGDLGDQGEPGQKGAAGPPGETGSKGPEGGRGQQG
KEGEPGQAGPRGMQGDMGVPGLPGAQGPAGKSPTDTHIKQVCMRVVQEQLAQLAASLTRP
ESGVSGLPGPPGPPGPPGPSGDNGFPGHTGSRGLPGLKGPPGMLGRKGPKGDQGDRGDRG
PTAYGLKGAPGAPGLPGQPGRPAFGNDGRDGSRGPRGTPGVPGVPGPPGPSGTAGYCEPS
QCVLPAVASAVAGGKDSAMKGPPDM
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggatctgtccaggagctcccggctgcttcttctgctgcaagcgcttctcattgcctcc
gctcagaggggcccggtgggtcccagaggccccccgggaccacccggaatagctggcgtg
cccggcgtggacggcattgatggtgagagaggtgtggactccagagtgaacggtggcccg
ggtgccaccggtgataacggcaaagatggagctcctggagcttcaggtcttccaggagca
gacggaccagtgggacctcccggagatcgaggtgtggcaggtgtaaaaggacaaaaaggg
gattccggaccaccaggcccagccggggagcctggtgtgggaccagatggcttggatggg
ataccagggactgatggactcccaggagaaatgggcaaagtgggccctccaggagccaga
ggcaagaggggccaagtgggtgcgagtggagctgtgggacctcggggtcctccgggagtt
tatcaggggcaagaattgtgccctagcgcttgtccagctggactttcaggacactctgga
ctgcccggcatgaaaggtcacaagggtgtgaagggtgagtctggagagcccggtcgacaa
ggacacaagggtgaggagggtgaacaaggactacagggagacgtcggatctcaaggactt
ccgggcccggctggaaccaagggcctggcaggaatcaagggctcgaaaggcgaaagggga
ccccgtgggaagtccggagacttgggacctcagggccgccagggagctccgggggaaatc
ggccaaagaggtgcaatcggggagaccggacccgggggagtgcagggggatcgaggtcct
tccggaatcagaggaccacccggaccaaagggagaacctggtcttcctggtccagacggt
cgggaggggatccctggactacctggctcaaagggtcttcccggcaagaacggagctccg
ggcgatgccggactacaaggtcttcccggggttccaggttcttacggccagaaaggagtt
agtggtcccaagggcgtgtctggtgatccgggcgttgcgggaatgatggggtctccagga
aagcaaggcgaacgcggtgaccagggtgaggtgggaccaatcggacccagagggggaccg
ggcgaacgaggggaacgaggaccaactggaccggtgggggcgccgggaggacggggaagc
aaaggtgacgtgggccttcctggactccccggaccggctggctatcgaggacaaaagggc
gaacggggtgccgtgggtcttgatggtccaaaaggagagcagggacctgcaggcactgag
ggaacgccaggacatcgaggagatctgggcgatcaaggcgaaccgggacagaaaggagcg
gcgggacccccgggcgagacgggaagcaagggaccggaaggcgggcgaggacagcaaggc
aaggagggcgagccgggccaagcgggaccgcgaggcatgcagggcgacatgggcgtgccg
ggccttcccggcgcacaaggaccggcgggcaaatcaccgacggacacgcacatcaagcaa
gtctgcatgagagtcgtgcaagagcagctggcccagctcgcagccagcctgaccagaccc
gagtcgggcgtgtcggggctacccggcccgcctggcccgcccggacccccaggccccagt
ggtgacaacggtttccctggtcacaccggatccagggggctacctgggctcaaaggaccg
cctggaatgctgggccgcaaaggacccaaaggggaccaaggcgacagaggggaccggggc
ccaaccgcctatggcctcaaaggagctccaggtgctcctggtctgccaggtcagccgggc
cggccggcatttggaaacgacgggcgagatggctcccgaggacctcgcgggactcccgga
gttcctggggtccccggtcccccgggaccctcggggaccgccggatactgtgagccgtct
cagtgtgtcctgcccgccgtggcgtcggcggtggcgggggggaaagactctgccatgaaa
ggccctcctgacatgtga
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