KEGG   Syngnathoides biaculeatus (alligator pipefish): 133507165
Entry
133507165         CDS       T09681                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1 isoform X1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
sbia  Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sbia00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    133507165 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbia03019]
    133507165 (cstf1)
Messenger RNA biogenesis [BR:sbia03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     133507165 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_EML ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_SCAP WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_VPS8 Beta-prop_NWD2_C Ge1_WD40 Beta-prop_IFT140_1st PROPPIN Beta-prop_WDR11_1st Beta-prop_SPT8 Frtz VPS8_N
Other DBs
NCBI-GeneID: 133507165
NCBI-ProteinID: XP_061687939
LinkDB
Position
10:28450636..28472827
AA seq 490 aa
MNLNVQVLSWPAIYISKYTLTCFPPLPVGKSVEVSPSTLHETDAKRSPCCMWRLMMFHIP
RASFCSRGLDCQGLCLWPPPSSHRTRPLLPPLTGGEPMGMGTHVILSGLCLAAHHGMEND
DSAVQYAIGRSDTVAPGVGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQ
LIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAF
HPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFLLVGTQHPTL
RLYDVNTFQCFVSCNPLDQHTDTISGVSYNPTANSYVTCSKDGSIKLWDGVSNRCVTTFD
KAHDGTEVCSAIFTKNSKYILSSGKDSVVKLWEISTGRMLVKYTGAGLSGRQMHRTQGVF
NHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRA
RFWYRRTTTD
NT seq 1473 nt   +upstreamnt  +downstreamnt
atgaacctcaatgtacaagtgctgagctggccagcaatatatataagtaagtatactctc
acctgctttccacctctccccgttggcaaatctgtggaagtgagtccatccaccctgcat
gaaactgatgccaaacggagcccatgctgcatgtggaggttgatgatgttccacattccc
agggcgagcttctgtagccggggattggattgccaaggtctctgcctttggccaccgccg
agctcacaccgcaccagacccctattaccgcctctcacaggtggtgagccgatgggaatg
gggacccatgtcatcctttcggggctatgcttggctgcgcatcatggtatggagaacgat
gacagtgctgtgcaatacgctattgggcgctctgatacagtagcgcctggcgtaggaatt
gatctagaatttgatgctgatgtacagacaatgtctcccgaagcttctgagtatgagact
tgctatgttacctcccataagggaccctgtcgcgttgcgacatatagtcgtgatggccaa
ctaatcgccacaggctctgctgatgcttcgataaagatactggacactgagcgtatgcta
gccaaaagtgctatgccaattgaggttatgatgaatgagacagctcagcaaaacatggag
aatcaccctgtgattcgaacactgtatgaccacgtcgatgaagtcacctgcttggccttc
cacccaactgaacagatccttgcttctggctcaagagattataccctcaaactatttgac
tactcaaagccctctgcaaaaagagcatttaaatatattcaggaagctgagatgctgcgt
tctatctcctttcatccatctggagatttccttctggttggaacacagcaccccacactg
cgtctttatgatgtcaacacctttcagtgttttgtgtcctgcaaccctctggaccagcat
acagacacgattagcggtgtcagttacaatcctacagccaacagctacgtcacctgcagt
aaggacggtagcattaaactgtgggatggtgtatccaatcgctgtgtgaccacctttgac
aaagctcatgatggaacagaggtctgttcagctatctttacgaagaactcaaagtacatc
ctgtccagtgggaaagattcagtggtcaaactgtgggaaatatcaacaggccgaatgttg
gtgaaatacacaggtgctggtcttagtggtcgtcagatgcatcgtacacagggtgtgttt
aaccacacagaggattatgttcttcttcctgatgagcgcacaatcagcctttgctgctgg
gattcccgtacagcagagaggaaaaacctgctctctctgggtcacaacaacattgtccgc
tgcattgtccactcgcccaccaatcctggtttcatgacttgcagtgatgacttcagggct
cgtttctggtaccggcgcaccaccacagattga

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