Syngnathoides biaculeatus (alligator pipefish): 133507209
Help
Entry
133507209 CDS
T09681
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sbia03036
]
133507209 (chd5)
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
133507209 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
133507209
NCBI-ProteinID:
XP_061688012
LinkDB
All DBs
Position
10:21208261..21261503
Genome browser
AA seq
1992 aa
AA seq
DB search
MPGSLSNEDEAQDDMDFDDEMPDEEDVRTALPLASIGSFFSDDDDSFKQQQKKKTKKMKE
GKVAKVKKRRKEGGIQVNADSEQDHASEADAEDADRPERGSGSESSMFSPNKKKKKKPRE
KKERKPRRKKRDEEDDDDDDDDGTMKEPKSSSQLMHEWGLEDVQYGFTEDDYKTITNYKA
FSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVA
PPASGGQLGAQLGPVKKAKTKEGKGPGARKRSRSAKDVKKKAKPKKTKSKSGQSGKKKKA
SSSDEDFPDESDFDDISILSASVLCDASGAAAATAAAKKKARRGRKKRKKEDGDGYETDH
QDYCEVCQQGGEIILCDTCPRAYHLVCLEPELEQAPEGKWSCPHCEKEGIQWEAKDEEDE
EEEEEVAAAGEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPR
CMCPPLKGKVQKIMHWTWGDAPLPAESPEGPGPDGRPAADPLSKPPLKGHPEREFLVKWA
GLSYWHCSWVSELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEELNSDKRKSKDPQYA
AMEERFYRYGIKPEWMIIHRVLNHSFDKDGDVHYLIKWRDLPYDQCTWEVDRFDVPEYDS
HKASYWDHREQILGEDQRPVVASKLKEEPPKREIPPDAPIIDPTIKFEHQPWYINATGGT
LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLS
TIINWEREFEMWAPDFYVVTYTGDKDSRAIIRENEFTYEDSAVKLGRKAFRMKKDTPIKF
HVLLTSYELITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPL
QNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKN
MPAKTELIVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLF
PVAAVEAPVLPNGSYDGSQLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDF
LEFEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYD
SDWNPHNDIQAFSRAHRIGQNRKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGS
KTGSMSKQELDDILKFGTEELFKDEMEAARNMGGDNKDGEEGNVIHYDDDAISKLLDRSQ
DATEDTEIQNMNEYLSSFKVAQYVVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQ
QQEDLARNLGKGKRIRKQVNYNDTTQEDQEWQDDVSDNQSEYSVGSEDEDEDFEERPEGG
RRHSRRHLRNDKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFTSHWI
VRDLRGKSEREFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRK
KVQEFEHVNGKLSSPDLIPIGMELKKLTESVSSDPNTPLQASPLATQPGTPDQPEKAEGP
VEEKDAAEQDAKKEQEQTSSEPTAAREEEEEAHQREEKEAADADESIKPAPEDQTGGGEK
GGKPAEKATGEDSPRNESQSEEPEKPPERGDGEEKESKTDEVKSEEASAAADAQLNGDKD
TPDELDDPRKEDKNGFKTKFMFNIADGGFTELHTLWQTEERAALSSGKMADIWHRRHDYW
LLAGIVTHGYARWQDIQNDPRYAILNEPFKTEVHKGNYLEMKNKFLARRFKLLEQALVIE
EQLRRAAYLNMSQDPGHPAMALNTRFTEVECLAESHQHLSKESLGGNKPANAVLHKVLNQ
LEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGGEPPPQQTFSQGGFAC
SQLYGGTFGGAFRGPGGQPMVNYSQMPLGPYVSVSNGPPSSHLDKKTFESLRDAATPDLK
SGKASDVICIED
NT seq
5979 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtcgctgagcaatgaagacgaggcgcaggacgacatggattttgacgacgag
atgccagacgaggaggacgtgcgcacggcgctgcccctggcgtccatcggcagcttcttc
tcggacgacgacgactccttcaagcagcagcagaagaagaagaccaagaagatgaaggag
ggaaaagtggccaaggtcaagaagcggagaaaggagggaggcatccaggtgaacgcggac
agcgagcaggaccacgcgtccgaggcggacgcagaggacgccgaccgtcccgagcgaggc
tccgggagcgagagcagcatgttcagcccaaacaagaagaagaagaagaagcccagggag
aagaaagagaggaagcccaggaggaagaagcgggacgaggaggacgacgacgacgacgac
gacgacgggacgatgaaggagcccaaatcgtccagccagctgatgcacgagtggggcctg
gaggacgtccagtacggcttcaccgaggatgactacaagactatcaccaactacaaagct
ttcagccaattcctcaggcctctcatcgccaagaagaaccccaagatccccatgtccaag
atgatgacggtgctgggggccaaatggcgagagttcagcgccaacaacccgttcaagggc
gcgtccgccaccgccgtggccgccgccgtggccgccgccgtggaaacggtcaccgtggcg
cctcccgcctccggcggccagctcggcgctcagctcgggcccgtcaaaaaagccaaaacc
aaagagggcaaagggcccggggcccgcaagagaagcaggagtgcgaaagacgtgaagaag
aaagcgaagccgaagaagaccaaatccaagtcgggccaaagcgggaagaagaagaaggcg
tcttcgagcgacgaagacttcccggacgagtcagactttgacgacatcagcatcctcagt
gcctcggtgctttgtgacgcctcaggggccgccgccgccaccgccgcggcgaagaagaag
gccaggcgcgggcgcaaaaagaggaaaaaggaggacggcgacggctacgagacggaccac
caggactactgcgaggtgtgtcagcagggcggcgagatcatcctgtgcgacacgtgtcca
cgggcgtaccacctggtgtgcctggagcccgagctggagcaggcccccgaaggcaaatgg
agctgcccccactgtgagaaggagggcatccagtgggaagccaaagacgaggaggacgag
gaggaggaggaggaggtggcggcggcgggcgaggaagaggacgaccacatggagttctgc
cgggtgtgcaaggacggcggcgagctgctgtgctgcgacacctgcccgtcgtcctaccac
atccactgcctcaacccgccgctgcccgagatacccaacggcgagtggctgtgtccgcgc
tgcatgtgcccacccctcaaaggcaaagtgcaaaagatcatgcactggacgtggggcgac
gccccgctgccggccgagtcgcccgagggcccgggcccggacggccggcccgccgcggac
cccttgagcaagccgcccctcaagggccaccccgagagggagttcctggtcaagtgggcc
gggctgtcgtactggcactgctcctgggtcagcgagctgcagttggaactgtaccacacg
gtgatgtaccgcaactaccagcgcaagaacgacatggacgagccgccgccgtacgattac
ggctcgggcgaggaggagctgaacagcgacaagcggaagagcaaagacccgcagtacgcc
gccatggaggagcgcttctacagatacggcatcaagcccgagtggatgatcatccaccgc
gtgctcaaccacagctttgataaagacggggacgtccactacctgatcaagtggagggac
ctcccttacgaccagtgcacgtgggaggtggaccgcttcgacgtgcccgaatacgacagc
cataaagcgtcctactgggaccacagggagcaaatcttaggcgaggatcagcgccccgtt
gttgcgtccaagctcaaggaggagcccccaaagagggagatccccccagacgctcccatc
atagaccccaccatcaagttcgagcaccagccgtggtacatcaacgccaccggggggacg
ctgcacccgtaccagctggagggcctcaactggctgcgcttctcctgggcgcagggcacc
gacaccatcctggccgacgagatgggcctgggcaagacggtccagaccatcgtcttcctc
tactcgctttacaaagagggtcactccaagggtcccttcctggtgagcgcgccgctgtcc
accatcatcaactgggagcgcgagttcgagatgtgggcccccgacttctacgtggtgacc
tacaccggagacaaggacagtcgcgccatcatccgggagaacgagttcacctacgaggac
agcgccgtcaagctgggacgcaaagccttccggatgaagaaagacacgcccatcaagttc
cacgtgctgctgacctcctatgagctgatcaccatcgatcaggccatcctgggatccatc
acctgggcctgcctggtggtggacgaggcccaccggctgaagaacaaccagtccaagttt
ttcagaatcctcaacgggtacaagatctactacaagctgctcctcactgggactccactt
cagaacaacctggaggagcttttccacctgctcaacttcctcacgccggagcgcttcaat
aacctggagggcttcctggaggagtttgccgacatctccaaggaggaccagatcaagaag
ctccacgacctgctgggccctcacatgctcaggaggctcaaggcggacgtcttcaagaac
atgcccgccaagacggagctgatcgtgcgggtggagctcagccccatgcagaagaagtac
tacaagttcatcctgacgcggaacttcgaggccctcaactccaaggggggcggcaaccaa
gtgtcgcttctcaacatcatgatggatctgaagaagtgctgcaaccacccctacctcttc
cccgtggcggccgtggaggcccccgttttgcccaacggctcgtacgacggcagccagcta
gtgaagtcgtcgggaaagctgacgctgctgcagaagatgctcaagaagctcaaggacgaa
ggccacagagttctcattttctcacagatgaccaagatgttggatctgctggaggacttt
ctggagtttgaaggttacaagtacgagcgcatcgacgggggcatcaccgggggcctgagg
caggaggccatcgaccgcttcaacgcaccgggcgctcagcagttctgcttcctgctctca
acccgagccggaggtctgggaatcaacctggccagcgcagacaccgtcatcatctacgac
tcggactggaaccctcacaatgacatccaggctttcagccgagcgcaccgcatcgggcag
aacaggaaggtgatgatctaccgctttgtgacgcggggctcggtggaggagaggatcact
caggtggccaagaggaagatgatgctgacccacctggtggtgcggcccggcctgggctcc
aagacgggctccatgtccaaacaggagctggacgacatcctcaagttcggcaccgaggag
ctgttcaaggatgagatggaggcggcccgcaacatgggtggtgacaacaaagacggcgag
gagggcaacgtgatccactacgacgacgacgccatctccaagctgctggaccgcagccag
gacgccaccgaagacacggagatccagaacatgaacgagtacctcagctccttcaaggtg
gcccagtacgtggtcaaagaggaggacggtgaggaggaagtggagcgtgagatcatcaaa
caggaggagaacgtggacccggactactgggagaagctcctgcgccaccactacgagcag
cagcaggaggatctggcccgcaacctgggcaagggcaagcgcatccgcaaacaagtcaac
tacaacgacaccacccaggaggaccaagagtggcaggatgatgtttcagacaaccagtcg
gagtactcggtggggtccgaggacgaggacgaagacttcgaggagaggccggaaggtggg
cgccgacactctcgccgccatctgaggaatgacaaagacaaacccttaccccccctgctg
gcccgagtcggaggcagcatcgaggtgctgggcttcaacgcccggcagaggaaagccttc
ctgaacgccatcatgcgctgggggatgcccccccaggacgccttcacctcccactggatt
gtgcgagacctccgggggaagagcgagcgcgagttcagagcctacgtgtctctgttcatg
aggcacctgtgcgagccgggcgccgacggggccgagaccttcgcggacggcgtcccgcgc
gaggggctgtcgcggcagcacgtgctcaccaggattggcgtcatgtcgctggtccggaaa
aaggttcaagagttcgagcacgtgaacggaaagctgagctcgccggacttgatccccatc
ggcatggagctgaagaagctgaccgagagcgtctcctccgaccccaacacgccgctgcag
gccagcccgctcgccacgcagcccgggaccccagaccagccagagaaggccgaaggtccc
gttgaggaaaaggacgccgctgagcaagacgccaagaaagagcaggaacagacgtcgtca
gagccgacggccgcccgtgaggaagaggaagaggcgcaccaacgcgaggagaaggaggca
gccgacgccgacgagagcatcaagccggcccccgaggaccaaacgggagggggcgaaaag
ggcggcaaaccggcggagaaggcgaccggcgaggactcgcctcgaaatgagagtcagtcc
gaagagcccgagaagccgcccgagagaggggacggcgaggagaaggaaagcaaaacggat
gaggtgaagagcgaggaggcctccgccgccgcagacgctcaactgaatggcgacaaagac
acgccggacgaactggacgaccccaggaaggaggacaagaacggattcaaaaccaagttc
atgttcaatatagctgatggaggcttcacagagttgcacacgctgtggcagacggaggag
agagcggcgctgtcgtccggcaagatggccgacatctggcaccgtcgccacgactactgg
cttctggcgggcatcgtcactcacggctacgcgcgctggcaggacatccagaacgacccg
cgctacgccatcctcaacgagcccttcaagaccgaggtgcacaagggcaactacctggaa
atgaagaacaagttcctggccagacgcttcaagttgctggagcaggcgctggtgatcgag
gagcagcttcggcgggcggcctacctcaacatgagccaggaccccgggcaccccgccatg
gccctcaacacccgcttcaccgaggtggagtgtctggccgagtcccaccagcacctgtcc
aaagagtccctggggggcaacaagccggccaacgccgtgctgcacaaagtattgaaccaa
ctggaggagctcctcagcgacatgaaggccgacgtgacgcggctccccaacatgttgtcg
cgcatcccgcccgtgtccgcccgcctgcagatgtccgagcgcagcatcctgagccgcctc
accagccgaggaggggaaccgccgccgcagcagactttcagccagggcggattcgcctgc
tcccagctgtacggaggcacgtttggtggtgcgttcaggggccccggtgggcagcccatg
gtcaattacagtcagatgcctctggggccgtacgtcagcgtgtctaacggtccccccagc
agccacctggacaagaagaccttcgagtccctgcgagacgcggccacacccgacctgaaa
tccggcaaagccagcgacgtcatctgcatcgaggactga
DBGET
integrated database retrieval system
