Syngnathoides biaculeatus (alligator pipefish): 133507787
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Entry
133507787 CDS
T09681
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04510
Focal adhesion
sbia04512
ECM-receptor interaction
sbia04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133507787 (col2a1b)
04518 Integrin signaling
133507787 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133507787 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133507787 (col2a1b)
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133507787 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
133507787
NCBI-ProteinID:
XP_061689204
LinkDB
All DBs
Position
10:15560956..15623316
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AA seq
1491 aa
AA seq
DB search
MVSFLDSRTLLLLAAAQVCLLAVVRCQDDNQGDALSCLQDGQRFSDKDVWKPEPCRICVC
DTGTVLCDEIVCEELRDCPKPEIPFGECCPICAADPPPPIGTPGAKGQKGEPGDITDVIG
PRGPPGPMGPPGEQGQRGPRGEKGEKGTPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGSPGEAGEPGQS
GALGPRGPPGPSGKPGDDGESGKPGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYSGVD
GAKGETGALGSKGESGAPGESGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIP
GAKGSSGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGITGFKGEAGPKGELGPA
GLQGAPGPQGEEGKRGPRGEPGAAGPIGPHGERGSPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLVGAHGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGSQGLQ
GPRGLPGTPGTDGPKGAIGPAGSGGAQGPPGLQGMPGERGGSGIPGPKGDRGDLGEKGPE
GAPGKDGGRGLTGPIGPPGPGGPNGEKGETGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGSDGQPGLKGEMGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPSGKDGPKGVRGDGGPPGRQGDAGLRGPAGTPGEK
GDAGEDGPPGALGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GPPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGSPGIKGDRGNTGPAGAPGAPGAPGST
GPVGPTGKQGDRGEAGAQGPAGPPGAAGARGMPGPQGPRGDKGEGGETGERGQKGHRGFT
GLQGLPGPPGQSGDQGATGPAGPSGQRGPPGPIGPSGKEGSNGMPGPIGPPGPRGRSGET
GPSGPPGTPGPPGPPGPPGPGIDMSAFAGLGHTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTVDAIKVFCN
METGESCVRSKPSSIPRKSWWSSKSKDRKHVWFGETINGGFHFSYGDDNLAPNTAAIQMT
FLRLLSTEASQNITYHCKNSVAYMDAAAGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTRHTGKWGKTVLEYRSQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atggtcagcttcctggattcaaggactctactgctacttgcagccgcacaagtgtgccta
ttagccgttgtcaggtgtcaggacgataaccagggcgatgctcttagctgcttgcaggac
ggccagcgctttagcgacaaggacgtgtggaagcccgagccgtgtcgcatctgcgtgtgc
gacaccggaaccgtcctgtgcgacgaaatagtctgcgaggagctcagagactgccccaag
cccgaaatcccattcggagagtgttgccccatctgcgccgctgacccgccgccgcccatt
ggaacacctggagctaagggccagaaaggtgaaccaggagatattaccgatgtcatagga
ccaagaggaccacccggcccaatgggcccaccaggagagcagggacagcgaggaccaaga
ggagaaaagggagagaagggaacacccggtccacgtggcagagatggcgagcctggcacc
cccggaaaccccggcccccctggaccaccgggacctaatggaccccctgggctcggtgga
aattttgctgctcagatggcaggcggcttcgacgagaaggccggcggcggcgctcagatg
ggtgtgatgcaagggcccatgggcccaatgggtccccgaggaccacctggccccactgga
tctcctggccctcaaggattccaaggcagccccggagaggctggagaacccggacaatct
ggtgccttgggaccccgcggcccccctggaccctctggaaaacctggagatgacggtgag
agtggcaaacctggaaaatcaggcgagcgtggaccttctggaccgcagggagctcgcgga
ttccccggaacgcccggcctgcccggcatcaaggggcatcgaggatactccggtgttgat
ggtgctaagggagagaccggtgctcttgggtcaaagggcgagtctggtgctcctggagag
agcggcgctcccggaccaatgggacctcgaggtctgcccggggagaggggtcgtcctggg
cccagcggcgttgctggtgcccgtggtaatgatggtttgcccggtcctgctggtcccccg
ggcccagtcggtccttctggagctcccggcttccctggttctcctggttcaaagggagaa
gccgggcccaccggtgctcgtggacccgagggtgcgcaagggccccgcggagagtccggc
acgcccggatcatctggaccttcgggcgcttctggaaatcccggtactgatggcatcccc
ggagccaaaggatcatctggggctcccggtatcgcaggtgctcccggtttccctggacct
cgcgggcctcccgggcctcagggagcgaccggacctctcgggccaaaaggaacatctggc
gatccaggtatcacaggcttcaagggcgaggcaggaccgaaaggagagcttggaccagct
ggtcttcagggagcccccggcccacaaggagaagaaggcaagagaggacccagaggtgaa
cccggtgctgctggaccaattggacctcacggagagagaggatctcccggtaaccgcggt
ttcccaggtcaagatggtcttgctggtcccaagggtgcccccggtgagcgtggaccctcc
ggcgccagtggtcccaagggtgctaatggtgaccccggccgtcccggagagtccggtctt
cccggcgccagaggtcttaccggacgccccggtgacgccggcccccaaggcaaagtggga
ccttctggagctccgggtgaagacggccgaccgggacctcccggcccccagggcgcccgt
ggccagcccggcgtcatgggattccctggccctaaaggagccactggcgagcctgggaaa
tccggagagaagggattggtgggagctcatggtctgagaggtctgcctggcaaagatgga
gaaactggtgccgctggacccccgggccctgctggccccgccggcgagagaggagagcag
ggtcaacccggtccttctggtttccagggtctgcccggtccccccggcccccccggtgag
ggtggcaagcctggagatcagggtgtcccaggagaaggcggagctgccggtgccaccggg
cccaggggagagcgaggcttccccggagagagaggagccgccggttctcagggtctgcag
ggaccccgcggcctgcccggaactcctggaaccgatggccccaagggagctattggaccc
gccggaagtggcggagctcagggacccccaggtctgcagggtatgcccggagagagagga
ggatccggtattcccggacccaaaggagacagaggtgatcttggcgagaaaggacctgaa
ggtgctcccggaaaagatggaggcaggggtcttactggtcccatcggccctcctggtcct
ggcggtcccaacggtgaaaagggtgaaaccggtcctgctggtccttctggagctcctggt
acccgtggcgcccccggtgatcgaggtgagactggacctcctggacctgctggatttgct
ggaccccctggctctgacggacaacccggactcaagggagagatgggagagtccggacag
aagggtgacgccggcgccccaggaccacaaggaccatccggtgcacccggacccgctggc
ccgactggagtttctggacctaaaggagcacgcggcgctcaggggcctcctggcgccacc
ggcttccccggagccgctggccgtgtcggaccacccggtccaaatggcaatcctggaccc
gccggtcccgccggcccttcaggcaaagacggccccaagggcgtgaggggagacggcggc
cctccgggccgacagggcgacgctggacttcgcggtccggccgggactcctggagagaag
ggagacgccggagaggacggcccccctggcgccttaggtccctccggtcctcagggtttg
gccggccagcgcggtatcgtgggtctgcccggacagcgcggtgagagaggtttccccggc
ctgcctggaccctctggtgaacctggaaagcaaggagcacccggcggcagcggagaccgc
ggaccccccggacccgtcggaccgcccggactcaccggaccagcaggagagcctggcaga
gagggcaacgctggatctgatgggcctcctggtagagacggttctccaggaatcaagggt
gaccgcggtaacaccggacccgccggtgctccaggtgcgcctggcgctcccggttccacg
ggcccagtcggtcccactggaaaacagggagacaggggagaggctggtgcacaaggaccc
gccggacctccaggagctgctggtgcccgagggatgcccgggccccaaggacctcgcggc
gataagggtgaaggcggcgagactggtgagagaggacagaagggacaccgagggttcacc
ggtctgcagggtctgcccggacctccaggtcaatctggagaccagggtgctactggacct
gctggaccttctggacagagaggaccacctggtccgatcgggcccagtggaaaggagggt
tcaaacggtatgcccggacccatcggaccgcccggacctcgtggtcgcagtggagaaact
ggtccttcaggtcctccaggaacccccgggccccccggtcctcccgggccccccggcccc
ggcatcgacatgtccgccttcgccggcttgggtcacacggagaagtctcccgaccctctc
aggtacatgagagccgaccaggcctccggaaacttgcggcagcacgacgccgaggtggac
gccacgctcaaatccctcaacaaccaaatcgagaacatccgaagtcccgagggctctaag
aagaacccggctcgcacctgcagagacctcaagctctgccatcccgactggaagagcgga
gattactggatcgaccccaaccagggttgcacagtggacgccatcaaggtgttctgcaac
atggagacgggcgagtcctgtgtccgctccaagccgtccagcatcccgcgcaagagctgg
tggtccagcaagagcaaagaccgcaaacacgtgtggttcggagagaccatcaatggagga
ttccacttcagctacggcgacgacaaccttgcgcccaacacggccgccatccagatgacg
ttcctgcgcctgctgtccaccgaggcctcccagaacatcacctaccactgtaagaacagc
gtggcctacatggacgccgcggcgggcaacctgaagaaggccgtgctgctgcagggctcc
aacgacgtggagatccgcgccgagggcaacagccgcttcacctacagcgtcatggaggac
ggctgcacgagacacacggggaagtggggcaagacggttctggagtaccggtcgcagaag
acctcccgccttcccatcgtggacatcgcgcctatggacatcggtggtgccgaccaggag
ttcggagtggaagtgggcgccgtgtgcttcctgtga
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