Syngnathoides biaculeatus (alligator pipefish): 133507794
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Entry
133507794 CDS
T09681
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbia04121
]
133507794 (pdzrn3b)
Enzymes [BR:
sbia01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133507794 (pdzrn3b)
Ubiquitin system [BR:
sbia04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
133507794 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-C3HC4_4
Sina_ZnF
Prok-RING_4
zf-rbx1
U-box
PDZ_Tricorn
zf-TRAF
TRAF3_RING
zf-RING_6
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
133507794
NCBI-ProteinID:
XP_061689220
LinkDB
All DBs
Position
10:2822103..2946466
Genome browser
AA seq
1044 aa
AA seq
DB search
MGFELERFSGTVDPDLKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQRSCPVNCQRIS
SKELNHVLPLKNLILKLEIKCDNHVRGCDAVVKLQHLAEHAGMCDYSPAKCRNLGCNEVL
SLRDVDAHMREMCDFRAAGVCERGCGLTLTVKEQRLNEHCCVRALKAQNGLLHYKMMCLD
GELKKQTIEANKREKALLAQLSAAHAELQTTAVKYQKKFTEYSERIDSLTKTVTFSCKER
DTKRVAVVLLREGGSLGFNIMGGKPCVDDHDTTSNEGIFVSKITESGPADKMDGLQIHDR
IIEVNGKDLSKASHDQAVEAFRTAKDPIMVQVLRRAPLPKLFPTTADTQLSDISTQTEIT
LQHIMPLAKLPPSSPTRTVLEEYLLPEEHPPGHEYFDPNDFLDGINQDIERDELEYEEVD
LYRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIVQINGIEIQNR
EDAVVLLTSEGNQNISLLVARPHIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQNKHEEDGGTTDTATLLSNHHEKDSGVGRTDDSTRNDESSEQENIADDQTTASNTLS
SYRKLTFSQDTLGSTDLPFSGESLISGDYADADFLGIPLDECERFRELLELKCQMRNGGI
HGLYSQGGGAEGHDQEVVDKELELLNEELRNIELECLNIVRAHKMQQLREQCRESWMLHN
SGFRNYNTSIDARRHELSDITEMPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGA
EKQAGPSSANDRELKPLLSPLQEVCGPSRTKALSKDPDSLQLESKERKMGDSSKPGRNFG
QPRSPYKHAHIPAHARHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPIASSDLAQKMEWK
VKIRSDGSRYITKRPIRDKLLRDRALRIHEERSGMTTDDDAISELKMGRYWSKEERKQHA
VRSKEQRQRREFMKQSRADCLKEQVSLEEKKEPNIIELSNKKMMKKRNKKIFDNWMTIQE
LLTHGTKSPDGTKVYTSLLSVTTV
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggagcgcttcagtggaacagtagacccggatttgaaatgcaatctg
tgcaataaagttttggaagaccctctgactactccgtgcggccacgtcttctgctccggc
tgcgttctaccttgggtcgtccagcaaaggagctgccccgtcaattgtcaacggatctcc
tccaaagagctgaaccacgtcctgcctttgaaaaacctcatcctgaagctggagatcaaa
tgtgacaaccatgtgcggggctgcgatgcggtggtgaagctgcagcacctggccgaacac
gccgggatgtgcgactactctccggccaagtgcaggaatttgggatgcaacgaggtgctc
agcctgcgggacgtcgacgctcacatgcgggagatgtgcgactttcgagcggcgggggtc
tgcgagcgcggttgcggcttgacgctcacggtgaaagagcagcgactcaacgagcactgc
tgcgtgagagcccttaaagcgcagaacggcttgctgcactacaaaatgatgtgcctggac
ggcgagctgaagaaacagaccatcgaagccaacaagagggagaaagcactactggcgcaa
ctttccgccgctcacgcggagctgcagacgacggcggtgaaatatcagaagaaattcaca
gagtacagcgagaggatcgactctctcaccaaaacggtgactttctcctgcaaggaacgg
gatactaaaagagtggcagttgtcctccttcgtgagggtggatctctgggatttaacatc
atgggaggaaagccatgtgtggatgatcatgacaccacttcaaatgaggggatctttgtg
tccaaaattactgagagtggaccagccgacaagatggacggccttcaaatccatgaccgg
ataattgaggttaatggcaaagacctatcaaaagcgtcccatgatcaagcagtggaggcc
ttccgtactgccaaggatcccattatggtccaggttttgcgccgggcccctctgccaaaa
ttattccccacaaccgctgacacgcaactgtcagatatcagcacccagactgaaatcacc
ctccaacacattatgcccctcgccaagttaccaccatcatcacccaccaggacagtactc
gaggagtaccttcttccagaggagcatcctcctgggcatgaatactttgaccccaatgat
ttcctggatggtataaatcaggacatagaacgtgatgagctagagtatgaggaggttgat
ctgtacagagccaacatacaagacaagctgggcctgacgatctgttacaggaccgacgat
gaggatgaagctgggatctacattagtgagattgatccaaacagcatcgccgctaaagat
ggcagaattagagaaggtgataaaatcgtccagatcaatggcatcgagatccaaaaccgt
gaagatgctgttgtgttgctgaccagtgaagggaaccagaacatctctctcttggttgcc
agaccacacatccagctggatgagggctggatggacgatgacaggaatgatttcctcgat
gacctccacatggatatgcttgagcaacagcaccatcaggccatgcagttcactgccagt
atgctacagcagaacaaacatgaggaagatgggggcaccactgacaccgccacacttctt
tccaatcaccacgaaaaggacagcggagttggtcgtactgacgacagcacccggaatgat
gagagttcagaacaggagaacatcgccgatgaccaaactacagcatccaacacactgagc
agctacagaaaactgaccttcagccaggacaccctcggaagtaccgacctgcctttcagt
ggcgagtcattgatctctggagactatgccgatgccgactttcttggtatccccttggat
gaatgtgagcgcttcagagaactcctggagcttaagtgccaaatgaggaatggaggaatt
cacggcttatattctcaaggtggtggggcagaaggccatgaccaggaggttgtggacaaa
gagctggaactgctcaacgaggagctacgtaatatcgagctggagtgccttaatattgtc
cgtgcccacaagatgcagcagcttagggagcagtgtcgtgaatcctggatgctccataac
agtggcttccgcaactacaatactagcatagacgcacgccgccatgagctatcagacatt
acagagatgccggagaaatctgacaaagacagctccagtgcctacaatacgggcgagagc
tgccgcagcactccccttacactggagctgtctccagacaactccttgcgtcgtggggct
gagaagcaagctgggccatctagtgcaaatgacagggagctcaaacctctcctgtcccct
ctccaagaggtttgtggccctagcagaaccaaagccctttcaaaggatcctgattctctg
cagttagaaagcaaggagaggaaaatgggagactccagcaaaccagggaggaacttcggt
cagccacgctcaccctacaagcatgcacacatccccgcccacgcccggcactaccagagc
tacatgcagctgatccagcaaaaatctgccgtagagtatgcccaaagtcagatgagcctg
gtcagcatgtgtcgggacccgatcgcttccagtgacttggcccagaagatggagtggaaa
gttaagatccgcagtgatgggagccgctatattaccaaacggcccatacgggacaagctg
ttgagggaccgcgccttgcgcatacacgaggagcgcagcggtatgaccacagacgacgat
gccatcagtgagctgaagatgggccgctactggagcaaggaagagaggaagcagcacgct
gtccgttctaaggagcagcggcaacgtcgtgagttcatgaagcaaagccgagccgattgc
ctgaaggagcaagtcagccttgaggagaaaaaggagcctaacatcattgaactcagcaac
aaaaagatgatgaaaaagagaaataagaaaatatttgacaactggatgaccatccaggaa
ctgctgacccatggtaccaagtcaccagatggcactaaagtttacacctcactcttgtct
gtgaccacggtctaa
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