Syngnathoides biaculeatus (alligator pipefish): 133508111
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Entry
133508111 CDS
T09681
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sbia04515
]
133508111 (clstn1)
Cell adhesion molecules [BR:
sbia04515
]
Cadherins
Cadherin related
133508111 (clstn1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
Laminin_G_2
FAM176
PRIMA1
EphA2_TM
V_ATPase_I
Cadherin_C_2
PFF1_TM
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
133508111
NCBI-ProteinID:
XP_061689853
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All DBs
Position
2:12106439..12145026
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AA seq
981 aa
AA seq
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MRFGRKELFASAVGLVLALVCALDAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALD
KDAPLRYAESFEVTLTEEGEICGFRIHGQNVPFEAVVLDKSSGEGIIRAKEKLDCEMQKE
HTFTIQAYDCGEGPDGANMKKSHKATVHIQVNDLNEYSPVFKEKSYKATVIEGKKYDSIL
KVEAVDADCSFQFSQICNYEIVTPDVPFTIDKDGFIKNTEKLNHGREHMYKLTVTAYDCG
KNRASEDVLVKISIKPTCKPSWQGFNKRIEYEPGTGSLALFPGMHLETCDEPITSIRATI
ELETNHIGKGCDRDTYSEKSLHKLCGASSGTMELLPAPSSSANWTVGLPTDNGHDSDQVF
EFNGTQAVKVPDGLVSTSLKELFTISVWMRHGPGAHEKETILCNSDKTDMNRHHYSLYVH
NCRLILLLRQEPSEMENYKPAEFHWKLEQVCDKEWHHYVLNVEFPTVTLFVDGSTFEPFL
VTEDYPLHASRIESQLTIGACWQENSGHENGTETVSESSSGGNARMAQFFRGNLAGLMIR
AGKLENKKVIDCLYTCKEGLDVQLPEEVASTVKVEFNPNQSSLTVEGDDIDAFDKVMQHI
SYLNSRQFPTPGIRHLRISTTVKCFNEESCVTMPDVEGYVMVLQPEEPKISLSGIDHFAR
SAAEFESQEGVTLFPELRIVSTITREVEVDPESVATEGADDDPTVQETVVSEEIMHNLDT
CEVNVVGDELDAEHEGLEVDMDELQQRSLEMSSSHLGLVITGVNTMANYEQVLHLIRYKN
WHTDVLFDRKFKLVCSELNGRYISNDFKVEVNVIHTAGTMEQLSNALVQPNFINPVHQAS
VDLSGHNLVNAHQASVVPSAATIVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQENGKEN
EMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEEGEEEDDITSAESESSEDDEGGDQ
EDRQGASRQQQLEWDDSTLTY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgcggttcggaaggaaagaactcttcgcatccgccgtcggactggtcctggcgctggtg
tgcgcgctggatgcggctaaagttaataagcacaagccatggatagagacaacgtaccat
ggtatcgtgacagagaacgatgacaaagtgctgctggacccccccttaattgccctggac
aaagatgcgcctctacgctacgcagagagttttgaggtgaccctcactgaagaaggtgag
atttgcggcttcaggatccatggacaaaatgtcccctttgaagctgtggtcctggacaag
tccagtggtgagggaatcatccgggccaaggaaaagttggactgcgagatgcagaaggaa
cacaccttcaccatccaagcatacgactgtggagagggacctgacggtgccaacatgaag
aaatcccacaaggccactgtccacatacaggtgaatgacctaaacgagtactcgccagta
ttcaaagagaagtcctacaaagccaccgtcatcgagggaaagaaatatgatagcatcttg
aaggtggaggcagtggacgcagactgctctttccagttcagtcaaatctgcaactatgaa
attgtcaccccggatgtaccattcaccattgacaaagatggcttcatcaagaacacggag
aaactaaaccacggcagagaacacatgtataagctgactgtcaccgcttacgactgcggg
aagaatcgtgcctcagaggatgttctggtcaagatcagcatcaagccaacttgtaaacct
agctggcaaggcttcaataagaggattgaatatgagccaggcacaggaagtttggctctt
tttcctggtatgcacctagagacctgtgatgagccaatcacctccatcagagccacgatt
gaactagaaaccaaccatattggaaaaggctgtgaccgagacacctactctgagaagtct
ctacacaagctgtgcggagccagctctggtacgatggaactgctaccagcacccagtagc
tctgccaactggacggtaggactacccaccgataatgggcatgacagcgaccaggtgttt
gagttcaatggcacccaggctgtcaaggttcctgatggcttggtgagcaccagcctgaag
gagctcttcaccatttctgtgtggatgagacatggccccggggcccacgagaaggagacc
atcctttgtaactctgacaagacagacatgaacaggcaccactattcgctctacgtgcac
aactgcaggctgatccttctcctccgtcaagaaccatcagagatggagaactacaaacca
gctgagttccactggaaactcgagcaggtctgtgacaaagagtggcatcactatgtgctg
aatgtggagttccccacagtgacgctgtttgtggatggatctacttttgaacccttcctg
gtcacagaggactacccactgcatgcctccagaattgagagtcagctcaccattggtgct
tgctggcaagaaaactcaggacatgaaaatggcactgagactgtctctgagtcttcctca
ggcggaaatgcacgcatggcccagtttttccgtggaaaccttgcggggctgatgattcgc
gcaggcaagctggagaacaagaaggttattgactgtttgtacacatgcaaggagggcctg
gatgttcagctacccgaggaggtagcttccacagttaaggtggaatttaaccccaaccag
tcctcccttactgtcgagggggacgacattgatgcctttgacaaggtcatgcagcacatc
tcctacttaaactcccgccagttccccacacctggcatcagacaccttcgcatctccacc
accgtcaaatgcttcaacgaggagtcctgcgtgaccatgccggatgttgaaggttacgtg
atggtcctgcagcctgaggagcccaagatcagcctgagtggcattgaccactttgcccgc
agcgctgccgaatttgagagccaagaaggcgtgactttgttccctgagctacgcatcgtc
agcaccatcacccgtgaggtggaggtcgacccggaatcagtagccacagagggagcagat
gatgaccccacagtccaagagacagtggtatctgaggagatcatgcataacttggacacg
tgcgaagtgaatgtggtgggagatgaactggatgcggagcacgaaggccttgaggtagac
atggacgagctccaacaacgcagcctggagatgagctcttctcacctcggccttgtcatc
acaggcgtgaacaccatggccaactatgagcaggtcctgcatctcatccgttacaagaac
tggcacaccgatgtgctcttcgataggaaattcaaactggtgtgctctgagctcaacggg
cgctacataagcaacgacttcaaggtcgaggtgaatgtaatccacacagccggcaccatg
gagcagctcagcaatgccttggtgcagcccaattttattaaccctgtacatcaggcctct
gtggacctgtccggtcacaacctggtcaacgctcaccaggcgtcagtggttcccagcgca
gccaccattgtcatcgtcgtctgcgtcagtttcctggtgttcatgatcatcctgggcgtg
ttccggatccgggccgcacaccaacgcaccatgagagatcaggagaatggcaaggagaac
gagatggactgggatgactctgccctcacaatcaccgtcaaccctatggagacgtacgaa
gaccagcacagcagtgaggaggaggaagaagaggaggaggagagcgaggaaggggaggag
gaagatgacatcacgagcgctgagtcagagagcagcgaggatgacgagggcggcgaccag
gaggaccggcagggggccagcagacagcagcagctggaatgggacgactccaccctcacc
tactag
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