Syngnathoides biaculeatus (alligator pipefish): 133508280
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Entry
133508280 CDS
T09681
Symbol
cstf2
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133508280 (cstf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133508280 (cstf2)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133508280 (cstf2)
U7-dependent histone pre-mRNA processing factors
133508280 (cstf2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
RRM_Rrp7
Motif
Other DBs
NCBI-GeneID:
133508280
NCBI-ProteinID:
XP_061690045
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All DBs
Position
11:complement(13783041..13797157)
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AA seq
497 aa
AA seq
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MANIAAAAAAAAAAAANRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVY
DRETGKPKGYGFCEYQDQETALSAMRNLNGREFNGRALRVDNAASEKNKEELKSLGTGAP
ILESPFGDNVAPEEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLA
YALLQAQVVMRIVDPEIALKMLHRQTTTQPLVSSGQAAGAPAGNPPPAPPNMAAPQQQPV
VGMHVNGAPPMMQPPNMAVGPGPVPGPGPAPGAGPAPGPAGPPAGGAIPPRGLLGDGPND
PRGGSLLSVTGETIEPARAYMGAPQPHPAPPVHMGPMGAGPPPDMRGPPMDMRGPPMGEP
RNMMGDPRGPPMMEQRGPPMETRGRDPRAMDARGPAAGQRVPMVVGMQGAIPHPNMGPNP
PLAPRPGPGMPGVPPSGAGGGGFSPGQNQVSTQDQEKAALIMQVLQLTPEQIAMLPPEQR
QSILILKEQIQKTTGAP
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacattgccgctgcagctgccgccgctgccgccgcggctgcgaatagagacccg
gcggtcgaccgttcattacgctcggtgttcgtgggaaatattccttatgaagcaactgaa
gagcagttgaaagacattttctccgaagtcggacttgttgtcagctttaggttggtgtat
gacagggagactggcaaacccaagggatatggtttctgtgagtatcaagaccaggagacc
gcactcagtgccatgcggaacctcaacgggagagagttcaatggtcgtgcgctgcgtgtt
gacaacgccgccagcgagaaaaacaaggaagagcttaaaagtttgggtactggagccccc
atcctcgagtctccatttggggacaacgtggcaccagaggaggcgcccgagtccatcagc
cgggctgtggccagtctaccgcctgagcaaatgtttgaactcatgaaacagatgaagctg
tgtgtgcagaacagtcctcaggaggcgaggaacatgctgctgcagaaccctcagctggcg
tacgccctgctgcaggcccaggtggtcatgcgcatcgtggatccagagatcgcgctgaaa
atgctccaccgccaaaccacgacccagccgctcgtctcgagcggacaagcggccggagcc
ccggcggggaatccgccgcctgccccgcccaacatggccgcccctcagcagcagcctgtg
gttgggatgcacgtgaatggagcgcctccgatgatgcaacctcccaacatggccgtcggc
cccggacctgtacccggacccggtcctgcacccggagcagggccggcaccgggacccgcc
ggccctccagcagggggcgccatcccccccagaggtctgctgggcgacggccctaacgat
ccccgaggggggagcctgctgtcggtcaccggagaaaccatcgagcccgcccgagcctac
atgggggcgcctcagccccaccctgcgccgccggtgcacatgggtccaatgggcgctgga
ccgccgcccgacatgagaggaccaccgatggacatgagggggccgcccatgggagagccg
cgaaatatgatgggggaccccagagggccccctatgatggagcagcggggaccccctatg
gaaacccgaggccgcgatcccagagcgatggacgcccgcggccccgcggcgggccagagg
gtgcccatggtggtcggaatgcaaggcgccatcccgcatcccaacatggggcccaacccg
ccactcgccccacggccgggacccggcatgccaggagttcctccgtcaggagctggggga
gggggcttcagcccgggtcagaatcaagtttccacacaggaccaggagaaggccgccctg
atcatgcaggttctgcagctgaccccggagcagatcgccatgttgccccccgagcagagg
cagagcatcttaatcctcaaagaacagattcagaaaaccaccggcgcaccttga
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