Syngnathoides biaculeatus (alligator pipefish): 133508374
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Entry
133508374 CDS
T09681
Name
(RefSeq) protocadherin-1-like
KO
K16498
protocadherin delta 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
133508374
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sbia01009
]
133508374
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sbia04515
]
133508374
Protein phosphatases and associated proteins [BR:
sbia01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133508374
Cell adhesion molecules [BR:
sbia04515
]
Cadherins
Protocadherins
133508374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_2
PDGLE
Motif
Other DBs
NCBI-GeneID:
133508374
NCBI-ProteinID:
XP_061690293
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All DBs
Position
11:complement(18160042..18336213)
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AA seq
1014 aa
AA seq
DB search
MAAQLCLAVVLLSLCNAAPSDILYRVPEEQPPNTLVGSLAADRGLPDSGHLYKLEVGSPY
LRVDGKTGDIYTTEIPIDRETLRDCRNLFDNDKCYMEFEVSITDMVKGIGSGPRLIEGRI
EVLDINDNTPQFSSPILTLSIPENTHVGALFAIPMATDRDSANNGVAEYSLSMGPDAEQL
FGLQVAVDTDEKLPQLVVMGNLDREKKDSYDLNVRVVDGGRPARASSALLRVVVTDQNDN
APKFERSHYDTELAENSPLGHSVLQVRANDADMGTNGEIDYSLHQMSEAVQRLLRIDRAT
GIIYVKGLVDREEENFLKFSVVAKDRGPNSKSSKVVVTIKVRDQNDNAPTIEIRGIGLVT
HQDGIANISEDMPVSTAVALVQVSDRDEGENAVVTCVVAGDVPFQLQPLSESSNDRKRKY
FLQTTTLLDYERVKDYRIEIVAVDSGNPALSSTNSLKVQVTDMNDNTPSFSPAVLEVDFA
EGNQPGDKVLQVVAADADSGSNAELIYSIVERSATALFEIDSGSGEIRVKNLLDREETER
YEFRVAAADKGVPSKTGTATVVINVLDRNDNDPKFMLSGYSFSVIENMPPLNPVGVVTVT
DIDKGDNARVKLFVEPDNGKFVIQNGTGNILSSISFDREKESTYTFRLKAVDSGDPPRSS
YVGITINVLDENDNAPYVTKPSNSSYTYLSPVTPLETRVEVVEAEDIDSGHNAELEYIIT
GGNPYGLFHISPTTGEITLAQKFTGKHNGLHRLVVQVRDKGKPPRHTTTLVHVFVNNTMA
NMSLIDALVGHSLYTPLDRDIAGDPNYALAQRSNILYGSLAGIAGVILVIVAVVLIRHRL
QKDTKSGYQAGKKESKDLYAPKQGPKNSKGKKTKKGKAPKPTKPLEEDEDASLQKGLKFN
LINEAVGDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAVQDLPAT
NTFVGTGDNNSTGSDQYSDYSYKANPPKYSSKQVGHYANAPMYQRDIYWTDGVW
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggcggcacagctctgcctggcggtggtgctactgtcactgtgcaacgccgccccctcc
gacatcctctaccgggtccccgaggagcagccgcccaacaccctggtgggcagcctggcg
gcggaccgtgggctgcccgacagcgggcacctgtacaaactagaggtgggctcgccttac
ctccgcgtggacggaaagacgggagacatctacaccaccgagatccccattgaccgcgag
accctcagggactgtcgcaacctctttgataacgacaagtgttacatggagttcgaggtg
tccatcactgacatggtgaaaggcatcggatcggggccgcgcctcatcgagggccgcatc
gaggttctggacataaatgacaacacgccccagttctcctcgcccatcctcaccctgtcg
atcccggagaacacgcacgtgggcgcactgttcgccatccccatggcgacagatcgtgac
tcagctaacaacggcgtggccgagtattccctgagcatggggcccgacgccgagcagctc
ttcggactgcaggtggcggtggacacggacgagaagctgccccaactcgtggtcatgggg
aacctggaccgcgaaaagaaggactcgtacgacttgaacgttcgcgtggtggatggcggc
cgaccggccagagccagcagcgccctgctcagggtggttgttaccgaccagaacgacaac
gctccaaagtttgagaggagtcactatgacactgagctggcagagaacagcccgctagga
cactccgtgctacaggtccgtgcaaatgacgccgacatgggcaccaatggtgagatcgac
tacagcctgcaccagatgtccgaggcagtccagagacttctgcgcatcgaccgcgccact
ggaatcatctacgtcaaaggtctggtggaccgtgaggaggagaacttcctcaagttctct
gtcgtggctaaagaccgtgggccaaactccaagagctctaaagtcgtggtgaccatcaaa
gtacgggaccagaacgacaatgctcccaccatagagatccgcggcatcggcctagtgacg
caccaagatgggatcgccaacatctcagaggacatgccggtgagcaccgcggtggcactg
gtccaggtgtcggaccgcgacgagggggagaatgcagtggtgacgtgtgtggtggccggg
gacgtcccattccagctgcagcctctgagtgagtccagcaacgaccgtaaaagaaagtac
ttcctgcagaccaccacgctgctggactacgagcgagtaaaggactacaggattgagatc
gtggcggtggattccggcaacccagctttgtccagcaccaactccctaaaagtgcaagtc
accgacatgaacgacaatacacccagcttttctccagctgtcctggaagtggactttgca
gaggggaaccagccgggcgacaaggtgcttcaggtggtagccgctgatgctgacagcggc
agcaatgccgagctgatctacagtatcgtggagcgctcagccaccgccctgtttgaaatc
gacagcggcagcggggagattcgagttaagaacctgctggaccgcgaggagacagagcgc
tacgagttccgcgtggcggcagctgacaaaggcgttccgagcaaaaccggcacagccact
gtggtaattaacgtcctagaccgcaacgacaacgatccaaaattcatgctgagcggctac
agtttctccgtcattgaaaacatgccacccctaaaccctgtgggggtggtcactgttacc
gatattgacaagggcgacaatgcccgagtcaagttgtttgttgaacccgacaatggcaag
tttgtcattcaaaacgggaccggaaacatcttgtccagcatttcattcgaccgagagaag
gaaagcacttacacctttcggctgaaggcagtggactccggtgacccccctcgatcctcc
tacgtggggatcacaatcaacgtcttggatgagaatgacaacgccccctatgtcaccaaa
ccttccaactcgtcctacacgtacctgagccccgtcacacctcttgagacccgcgtggag
gtggtggaagctgaggacattgactcgggacacaatgccgagctggagtacatcatcact
ggggggaacccctatggactcttccacatttcccccaccacaggggagatcaccctggca
cagaaattcaccgggaaacacaacgggctgcaccggctggtggtgcaggttcgggacaaa
ggcaagccgcctcgccacaccaccactctagtgcacgtgtttgtcaataacaccatggcc
aacatgtcactgattgatgctctggtgggccatagtctctacaccccgctggaccgggac
attgcaggggaccccaactacgccttggcacagcgtagtaacatcctgtacgggagccta
gccgggatcgccggcgtcatcttggtcattgtggccgtggtcctcatccggcaccgactc
cagaaggacaccaaaagcggctaccaggcgggcaagaaggagagcaaagacctatatgcc
ccgaagcagggacccaaaaactccaaggggaaaaagaccaagaagggcaaagctcccaaa
ccaaccaaacctctggaagaggatgaggatgccagcctccaaaagggcctcaagttcaat
ctcatcaatgaggctgttggcgacagtcctcggatacacttgcccttaaactacccgccc
ggtagccccgacttggggcgacactaccgctccaactcgccactgccttccatccagctt
caaccacagtcgccctcagcctccaagaagcaccaggcggtgcaggacctccccgccacc
aacaccttcgtgggtacgggtgacaacaactccacgggctcggaccaatattcggattac
agctacaaggccaacccgcccaaatacagcagcaaacaggtaggacactacgcaaacgcg
cccatgtaccagcgggacatctattggaccgatggggtgtggtag
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