Syngnathoides biaculeatus (alligator pipefish): 133508524
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Entry
133508524 CDS
T09681
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbia03041
]
133508524
Spliceosome [BR:
sbia03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
133508524
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_19
TPR_16
HAT_Syf1_CNRKL1_C
TPR_12
HrpB1_HrpK
TPR_MalT
Iml2-TPR_39
TPR_21
TPR-S
Motif
Other DBs
NCBI-GeneID:
133508524
NCBI-ProteinID:
XP_061690668
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All DBs
Position
11:9811890..9835625
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AA seq
702 aa
AA seq
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MTARFSDARARFAMMADEEDMSSNEDLGEPSALPDTEDGGNDLPADFESLWNAAHDNPRD
FTSWTDLLQYCEQESHIAASRRALVAFLSRFPLCYGYWKKFADLERRAGNNDKAGEVCVQ
GLQSIPLSVDLWIHYINLLLGTLDMNLPESPKRIRSVFEDAVVAAGLDFHSDRLWDLYFE
WEKEQGNLRNATAVLDRVLKVPTQRYNTHYEKFKVHLHKCEPKEALSLEEYEEVRAFCRE
SQKVERAEQAKEKGEERPPGEEDPATPEGTDSEELMQRMREQVLIRRDKIYQENENEVRK
RWNFEDAIKRPYFHVKPLDQTQLRAWNSYLDWEVAQLKKDTKDHDKDSNKADTDVKEDPE
VTAEPPGAIEETNIFHDDHRVRVLFERCLITCALYEEFWTRYIQYLGTSSVDEVRAVYKR
ACDIHLPSTPNIHMQRATFEERHGDLAEARRVLEALDKNMPGLAVVRLRRAALERRAGQL
EQSVALLQEAVTQSKEKPTLHAFYSIKLARLLLKLVRNPSRARSVLQDALEISPDNDKLH
LNLLEVELSSETWSSAEAVQQCVTRALEAPLAPHIKILLSQRGLQFVEEYSNSIQSVLSV
YEAHQKLIKELGGTKREAESGDKNQEKLSKGDDGSANGESAQVPAADPQVPITMPPPPPV
SMDVSAQSGGYGGYGSWYQQPQYSSYGYQNTWNYNQGYYPPS
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgcggtttagtgacgcaagagcgaggtttgcgatgatggcagacgaagaggat
atgagcagcaacgaggacctcggagagccttcagcacttccagataccgaagacggggga
aacgatttgccagcagactttgaaagtctttggaatgccgcacacgacaaccctcgagac
ttcaccagttggactgacctgttgcagtactgtgagcaagagagccacattgcagcatca
cgacgagccttggtggcatttctctcccgctttccactctgttatggttattggaaaaaa
tttgctgacttggagcgtcgtgctggtaataacgacaaagcaggagaggtgtgtgttcag
gggctccagtcaatccctctgagtgtcgatctgtggatccactacatcaatctgctattg
ggaacattagacatgaacttgcctgagtcgcctaagcgtattcgcagtgtgtttgaggac
gctgttgtagcggcagggctggacttccattcagaccggctatgggatttgtattttgaa
tgggagaaggagcaaggcaacttgaggaatgccacagctgtgctagacagagtcctcaaa
gttcccactcagcgctacaacacccactatgaaaagttcaaggttcaccttcacaaatgt
gagcccaaagaagcactttctctggaggaatatgaggaggtgagggccttttgccgtgag
agtcagaaagtggagcgtgctgaacaggccaaagagaagggcgaagagaggccgcctgga
gaggaagaccctgccacacctgagggcacagactcagaggagctgatgcagaggatgaga
gaacaggtgttgatccggagagacaaaatttaccaggagaatgaaaatgaagtccggaag
agatggaactttgaagatgcaatcaaacgtccttacttccatgtgaagccacttgatcaa
acccagctgcgtgcctggaactcttacctggactgggaggtcgcccaactgaagaaagac
actaaagaccatgacaaagactcaaacaaggcagacacagatgtcaaagaagacccagag
gtgacagccgagcctccgggagcgatagaagaaaccaacattttccatgatgaccacaga
gttcgtgttctctttgagcgctgcctgatcacctgtgcactctatgaggaattctggacc
aggtatattcagtatctggggacatccagtgtggatgaggttcgggctgtctacaagcga
gcctgtgacatccacctaccttcaacaccgaacattcacatgcagagggccaccttcgag
gaaagacacggtgacctggcggaagcacggcgagtgttggaggctctggataaaaacatg
ccaggtttggccgtggttcgtctccgcagggcggctttggagaggagggcgggccaactt
gagcagtctgtagcgttgctgcaggaggcggtgacccaatcaaaagagaagcctacattg
cacgcattctactccatcaagcttgctcgtttgctgctgaaacttgtcagaaacccaagc
agagctcggagtgttttacaggacgcacttgagattagtccagataatgacaaattgcac
ttgaacctgctggaagtggagctatcaagtgaaacctggtcctcagcggaagcagtgcag
caatgcgtgacgcgagccctggaggcgccactcgcaccacacatcaaaatcctcttgtca
cagcgcggcctccagtttgtagaagagtacagcaactctatccagagtgtgctgtcagtc
tatgaagcgcaccagaagcttatcaaggagctgggtggaacaaagagagaagccgaaagc
ggagacaagaaccaagagaaactgagtaaaggtgacgatggctcagcaaatggagaatca
gcacaagtcccagctgctgatcctcaggtcccaataactatgccacctcccccaccagtg
agcatggacgtgagtgcccagtccggtggatatggtgggtacggcagctggtatcagcaa
ccacagtacagcagttacggctaccagaacacctggaactacaaccagggatactatcca
cccagctaa
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