Syngnathoides biaculeatus (alligator pipefish): 133508667
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Entry
133508667 CDS
T09681
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
133508667 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbia03021
]
133508667 (polr1a)
Enzymes [BR:
sbia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
133508667 (polr1a)
Transcription machinery [BR:
sbia03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
133508667 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
133508667
NCBI-ProteinID:
XP_061690930
LinkDB
All DBs
Position
11:4282499..4367863
Genome browser
AA seq
1686 aa
AA seq
DB search
MLFIKEAPWRRLEGISFGIYSAEEIRKLSVKSITNSKLLDGVGNAAPNSLYDLALGPADN
KEACSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLFLLIRGSCLKCHMLTCSRPAVHLL
LNQLKLLDHGAMHQVYHIEEILSQFLELTDKATADEIATMLKEFTDSVVTEGSENIKPIR
HLVEKKSSLINDFWKINMKSRNCPHCRSKRFTLRREHNSKLIVTMPSESKRLGKTDEDVT
TGDKAYMTAITAREHTNKLWENEGFFLKCLFSGLMDNSRTNEEEKSFSPDHFFLELLVVP
PCRYRPVNQLGDQMFTNGQTVNMQAVMKDCTIVKKLLSLIAAENGTQQDESQANEEGDQS
ILSGIPGLTLTDKLYNIWIRLQTHVNIVFDSDMDKIMTEKYPGIRQILEKKDGLFRKHMM
GKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPG
ATTVITEDGRRTILSTTNFAQREAVAKQLLTPSPGPLKMPMKIVNRHIKNGDVLLLNRQP
TLHRPSMQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQNELGRAEAYTLVST
NQQYLVPKDGKPLAGLIQDHMVSGTWMTIRGCFVTRDQYTELVYRGLTDKPGRIKILPPA
ILKPQKLWTGKQVVSTILLNVIPEKAVPLNLVGKSKIPSKAWIQVPPRMAPGYRPDTMCD
SQVMIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRG
FTLGVEDIMVKPGANAKRKLIIQESLKIGTRALQAAFNLPTDVDEAEAKSHWQDAHLNPD
QRDFSMADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQISC
LLGQIELEGRRPPLMPSGKSLPCFQPYDPAPRAGGFVSGRFLTGIKPQEFFFHCMAGREG
LVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQP
GQFPFIEDNFEVIRKSQGLDEVLTRLDPQAASQHFSAIQRWKAKRELTCPRRGAFLLFSQ
KKMANLKQTEQGAIQNVCGRNVAVLKVVEQWRALDEAGRSKYKRKSSRCPEPTLGMFRPD
VSFGSVSEGFHDLTENFLQNRDPMSQHDLHTDRLRQLLHYKWQRSLCDPGEAVGLLAAQS
IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNSKKALKKA
QKLRRKLTKVSLAEVLHKVDVVEALRIGSHRHPKMRTFKITFSFLDPVCYAEDKMLSPQQ
ILHYMETRFFALLLKTIEKHCTKMASIAVETRKATTGDKDNVEEELADPAGGDDGEEEQE
REIVDDQGNEGDADASDAKRRDKQEEEVDYDSEEEAEDKDNVEEEEEEKGNGEISLDESH
MKFSGVRLQGKKRAKSRGVKEPTDQTRVNVVINSHLGIEGYCYDVKDELWCEVNLALSLS
KVHFDLTSLVSTLAQNAIIMETRGLTRCLLSETTTKTGGKEMVLNTEGINMHEMFEHSDI
LDVNRLYSNDVHAMANTYGIEVALKVIEKEIKNVFAVYGIEVDARHLSLVADYMCFEGVY
KPLNRHSITSNSSPLQQMTFETSYKFLKQATMLGFHDQLQSPSACLVVGKVVKGGTGLFE
LKQPLQ
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcataaaagaggcgccatggcggcgattggagggcatatcttttggcatttac
tctgccgaagagataaggaagttgagtgtaaagtccatcacaaactcaaagttgctcgat
ggtgttgggaatgcggccccaaatagcctgtatgacctggccctgggaccagcagacaac
aaagaggcatgttcaacttgctgtcaggatttcaacaactgtccaggacacctgggacat
gttgagctgccactacctgtgtacaacccactgttttttgataaactctttctgttgatt
cgtggctcatgtctgaagtgccacatgttgacatgttcacgaccagctgtccaccttctg
ttgaaccaactaaaattactggaccatggagcaatgcaccaagtttaccacatagaagaa
atacttagccagtttctggagttgacagacaaagccacggctgatgaaattgcaaccatg
ctcaaagagttcacagattcagtggtaactgaaggctcagaaaacatcaaaccgataaga
catcttgttgaaaagaaaagcagtttgataaatgatttttggaaaatcaacatgaaatct
cgaaactgtccccactgcaggagcaagcggttcaccttacgacgtgagcacaacagtaag
ctgattgtcacaatgccttcagaatcaaaaagattgggaaaaactgatgaggacgtgaca
actggggacaaagcctacatgactgccattactgcgagagaacacaccaacaaattgtgg
gagaatgaaggttttttcttgaagtgtctgttctctgggttgatggacaactcgagaaca
aatgaagaggaaaaaagtttctctcccgatcacttcttcctggagctacttgtggtccca
ccttgcaggtatcgtccagtcaatcaactgggtgaccagatgtttaccaatggtcagacg
gtcaacatgcaagctgtcatgaaggactgcacaattgtaaaaaaactgctttctctcata
gctgctgagaatggaactcagcaggatgagtctcaggcaaatgaagagggagaccagtct
attctctcagggattcctggactgactttaacggataaactttacaacatatggatccgt
cttcagacccacgtcaacattgtctttgacagtgatatggacaaaataatgacagaaaag
taccctggaatcagacagatcctggagaaaaaggacggattgttcagaaaacacatgatg
ggcaaaagggttgattatgctgcaagatctgtcatctgtccagatatgtacatcggaact
aatgagattggaattcccatggtgtttgcaacaaagttgacatacccacagcctgtcacg
ccatggaatgtgaaggagctacgtcaggctgtcctgaatgggccaaatgtccaccccggt
gcaacgacagtgattacagaggatgggaggagaaccattttatcaaccaccaactttgct
caaagagaagcagttgctaagcagttgttgacaccctctccaggtccactcaagatgcca
atgaaaatagtgaaccgccatattaagaatggagatgttttgttgttgaacagacagcca
actctgcaccgaccatcaatgcaggctcactgtgcacgcattttgcctggagagaaggtc
ctgaggcttcactatgccaactgcaaagcatacaatgcagactttgatggtgatgagatg
aatgctcacttccctcagaatgagcttggtcgagcagaggcctacacattagtcagcacc
aaccaacagtaccttgtgccaaaggatggaaagcctttggctggtctgattcaggaccac
atggtgtcaggtacatggatgacaattcgaggttgtttcgtcacaagagaccagtacact
gaacttgtgtacagaggattgactgacaaaccaggccgaattaaaatcctcccgccagct
atactcaagccacagaaactctggacaggaaagcaggtggtgtccaccatcctcctcaat
gttattccagaaaaggctgtgccattaaacctagttgggaaatcgaaaatccccagcaaa
gcatggatccaagttcccccaagaatggctccagggtatcgacctgacaccatgtgtgac
tcgcaggtgatgatccgtcagggggagttgttagtcggtgttctggacaaagctcactat
ggctcatcagcatatggtctggtgcattgttgctatgaactttatggaggggagaccagt
ggcaaactactcagctgtcttgcaagactctttactgcctaccttcaattatatagagga
ttcactctaggtgttgaggacatcatggtgaaaccaggtgctaacgcaaaaaggaaactc
attattcaagaatcactaaagattggtacaagagccctccaggcagcattcaaccttccc
actgatgtggatgaagcagaagccaagagccattggcaggatgctcatctcaacccagac
caacgagatttcagcatggctgatcacaaattcaaagaagtagccaaccaagtgaacaat
gacattaacaaggtgtgcatgccagttggtcttcacacttccttcccagacaacaacctc
caattgatggtccaatcaggtgccaagggttctaccgtaaacaccatgcagatctcatgt
ctactaggtcagattgagttagagggtcgtagacctccactgatgccctctgggaaatca
ttaccctgttttcagccatatgacccagcacccagagctgggggttttgtttctggcaga
ttcctcacagggataaaaccacaggaatttttcttccattgcatggctggcagagagggg
ctagtagatacagctgtaaaaacgtccagatcaggatacctgcagagatgtgtcataaag
catctagagggtttggtggtacagtatgatctgactgtgagggacagtgacggatctgtc
gttcagttcctctatggtgaagatgggcttgatatcccgaagacacaatttctgcaacca
gggcagtttcccttcatagaggacaactttgaggtcataaggaagtcccaaggcttggat
gaggtgttgacacgactggaccctcaagctgctagtcagcatttttcagccatacaacgc
tggaaagcaaagagggagctgacatgccctcgcagaggagcattcctattgttttcccaa
aagaagatggccaatcttaagcaaactgaacaaggagcaatacaaaatgtgtgtggcaga
aatgtggctgtgcttaaggtggtagaacagtggcgtgctcttgatgaagctggacgatca
aaatacaaaagaaagtcctcccgctgccctgaacccaccctgggcatgtttaggcctgat
gtaagctttggatctgtgtctgaaggatttcacgacctcacagagaatttcttgcagaat
cgagatccaatgagtcaacatgacttgcatacagacagactaagacaattgttgcattac
aagtggcagaggtcattgtgcgatccaggggaggcggtgggtctactagcagctcaatcc
attggtgagccatctacccaaatgaccctgaacacctttcactttgctggcagaggagag
atgaacgtcacattaggaatacctcgacttagagaaatcctaatggtggccagtgccaac
atcaagactccaatgatgagtgttccagtgctgaacagcaagaaagccttaaagaaagcg
caaaagctccgtaggaaacttaccaaggtctctttggcagaggtactgcacaaagttgat
gtggttgaggcattgcgcattggaagtcaccgtcacccaaagatgcggacatttaaaatc
acttttagctttcttgatcctgtctgttacgctgaagataagatgctctcaccccaacag
attctccactacatggaaaccagattttttgcactgctcctgaaaaccattgaaaaacat
tgcaccaagatggcatccattgctgtggagaccaggaaggccaccactggggacaaagat
aatgttgaagaggagttggctgatccagcagggggcgatgatggggaagaagagcaagag
agagagattgttgatgaccaggggaatgaaggtgatgctgatgcatcagatgccaagaga
agagacaagcaagaagaggaagtcgattatgacagcgaggaggaagctgaggataaagac
aatgtggaagaggaagaggaggagaaagggaatggggagattagtttggatgaatcgcat
atgaagttctcaggcgtgagattgcagggaaaaaaaagagcaaaaagcaggggagtaaaa
gagcctacagatcagacaagagtgaacgttgttataaattcccacctgggaatcgagggt
tactgctatgatgtcaaggatgaactctggtgtgaagtgaacctggctttgtcactgagc
aaagtgcactttgacctgacatcacttgtgtcaacactggcccagaatgccatcatcatg
gagaccaggggcctgactcgatgccttctgagtgagaccacaactaagactggaggcaaa
gagatggttctcaacacagagggcatcaacatgcacgaaatgttcgagcacagtgatatc
ttggatgtcaacagactctattccaatgacgtacatgccatggcaaacacctacgggatt
gaagtggctctcaaagtcatagagaaagaaatcaaaaatgtctttgctgtttatggtatc
gaggtggacgccagacatctgtcactagtagcagactacatgtgctttgagggggtatac
aagccactgaaccgccattccatcacatccaactcctcccctctgcagcagatgactttt
gagacgagctacaaattcctcaaacaggctaccatgctgggctttcatgatcagctccag
tcgccatcagcctgcctggtggtgggaaaggttgttaaaggaggaacaggactttttgag
ctcaaacaacccctgcagtag
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integrated database retrieval system
