Syngnathoides biaculeatus (alligator pipefish): 133508773
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Entry
133508773 CDS
T09681
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03008
Ribosome biogenesis in eukaryotes
sbia03013
Nucleocytoplasmic transport
sbia03015
mRNA surveillance pathway
sbia05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133508773 (nxf1a)
03015 mRNA surveillance pathway
133508773 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
133508773 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133508773 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133508773 (nxf1a)
03009 Ribosome biogenesis [BR:
sbia03009
]
133508773 (nxf1a)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133508773 (nxf1a)
mRNA cycle factors
Stress granule specific factors
133508773 (nxf1a)
Ribosome biogenesis [BR:
sbia03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
133508773 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_8
LRR_9
LRR_6
DUF1319
Motif
Other DBs
NCBI-GeneID:
133508773
NCBI-ProteinID:
XP_061691154
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All DBs
Position
11:11741107..11753749
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AA seq
644 aa
AA seq
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MEPRWKPVPNLQVTRALNSSSMVSREVRCTGFMTSEEHDDRTGPSNRNRKGRSSNKGRSH
DRFRRDRQRGAGGGFGGPGPRSRLEDLDGDVTMNDSSQDNSNQNRFTPYGRPFRKDGRDR
RQGKGGGGRGDQGGGGRGRASWYKVTIPHGKKYDKKWLLTALQNICSVTYTPVQYHIDQN
RVHFYLDDATAATALQKCSHKITDSDGYKVEVHVNRSIPPNFLLSDLKPEDIEHLKQCMA
KRFDGSQQALDLNNIRTDPDLVSQNVEVILNRRRSMEAVIRIIEENIPELTSLNLSNNRI
HKLDDLSGLVTKVPNLKSLNLSHNELKSERDLDKMKGLKLVELWLLRNPLCDLFKDQASY
ISAVRQRFPRLLKLDGNDLPPPIGFDVETPTTIPPCKGSYFGSDEIKGLILRFLQQYYSI
YDSSDRQPLLDAYHDGATLSLTIPFSSQNPSRSSLGEYQKDSRNLKRIRDSTSRFRLLKH
TRLNVVAFINELPKTQHDIASFTIDVNTYTNTLLSFTVSGVFKEVAVNGKSRDSTMAFSR
IFITVPAGNSGLCIVNDQLFIRMATTEEIRKAFVAPAPTPSSSPVPTLTAPQQEMLSAFS
QKSGMNLEWSQKCLQDNDWDFNKAAQIFTQLQTEGKIPDVAFIK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgcgttggaaacctgtccccaacctacaggtgacacgagcgctaaacagcagc
tctatggtgtcaagggaggttaggtgcactggtttcatgacttcagaagaacatgatgac
cgcactgggccgagcaatcgcaaccggaaaggcagaagttccaataagggtcgctcgcac
gaccgcttccgcagagaccgccaacgtggagcaggaggaggctttggaggtcccggacca
cggtccagactcgaagaccttgacggagatgtgacaatgaatgacagcagtcaagacaac
agcaatcagaacagattcactccgtacggaaggccctttcgaaaagatggccgagacaga
cgacaaggcaaaggaggaggcggtagaggagaccaaggtggtggaggccgaggccgtgcc
agctggtacaaagtgaccattcctcacggaaaaaagtatgacaagaaatggttattgacc
gcacttcagaacatctgctctgtaacctacacgcctgttcagtaccatatcgaccaaaac
agagtccatttctatttggacgatgccaccgcagccaccgctttgcagaaatgctcccac
aagattactgactccgacggttacaaggtggaagtgcacgtcaatcgcagcattccacct
aacttcctcctgtctgatctgaagcccgaagacatcgagcatttgaaacaatgtatggca
aaacgttttgatggctcacaacaagctctggacttgaacaacattcggacagaccccgat
ctagtctcccagaatgtcgaagtcatcctgaataggaggagaagtatggaagcagttatc
aggattatcgaagagaacattccagagctgaccagcttgaacctgagcaacaaccgtatc
cacaagttggatgatcttagtggcttggttacaaaggtgccgaatttgaagagcctcaat
ctttcccacaacgagctgaagtcggagagggacctggacaaaatgaaaggtctgaaactg
gttgagctctggctgctccggaatcccttatgtgacctcttcaaagatcaggcctcatac
attagtgctgtgcggcagagatttcctcgcttgcttaaacttgatggcaatgatcttcct
ccgccgattggatttgatgtggaaacaccgactactatccccccctgcaagggaagttac
ttcggctctgacgaaatcaagggcctcatccttcgattcttgcaacagtactacagcata
tatgactcttcggaccggcagcctctactggacgcttaccatgatggcgcaacgttgtcc
ctcacgatacctttctcgagtcagaacccctccaggtcgagtctgggagagtaccaaaaa
gacagtcgaaacctgaagcggatcagagactccacgagccgcttcagactgctgaagcac
acccgtctcaatgtcgtggctttcattaatgagttgcccaaaactcagcatgacatcgcc
tcttttaccatcgatgtgaacacctacactaacacactactgtcattcactgtgagtgga
gtctttaaagaagttgctgtcaatgggaaatcccgagactccaccatggccttctctcga
attttcatcacagtccctgcagggaattcaggcctgtgcatcgtcaacgaccagctcttc
atccgaatggccacaacagaggaaatccgcaaagcctttgtggcgcccgctccgacgcca
tcttccagccccgtgccaacccttaccgcgcctcagcaggagatgctgtcggccttctcg
cagaagtcgggcatgaacctggaatggtcccaaaagtgtctacaggacaacgactgggac
tttaacaaagcagcacagatcttcacgcagttacagacggaaggaaagatccccgatgtt
gcgttcatcaaataa
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