Syngnathoides biaculeatus (alligator pipefish): 133508812
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Entry
133508812 CDS
T09681
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133508812 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133508812 (cnot6a)
Enzymes [BR:
sbia01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133508812 (cnot6a)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133508812 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133508812 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
133508812
NCBI-ProteinID:
XP_061691232
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All DBs
Position
11:complement(26706867..26733495)
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AA seq
559 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMPSEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHLSD
NSLSRLPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLNYLLDNLAGAIKRIPTEQPPARSWISLQEP
DRARPSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMGCNADIISLQE
VETEQYYNYFFPELKEQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFSAVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMEVSSGKSLHGMEKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNGIPLVLCADLNSLPDS
GVVEYLSTGGVDCTHKDFKELRYSDSLTKFNCNGKNSTSNGRITHGFKLKSAYENGLMPY
TNYTFDFKGVIDYIFYSKPHLNVLGILGPLDPHWLVENNVSGCPHPHIPSDHFSLFTQLE
LLLPNIPPQVNGLHLPARR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccggatcccaggcggatgtacacaataatgcccagc
gaagaggcagccaatgggaagaagtcatattgggctgagctggaaattagtggtcgagta
agaagtctcagcactgccctttggtctctcacccacctcactgccctgcacctcagtgac
aattcgttgtcacgcttaccgccagacattgccaaacttcacaatttggtgtacctggat
ctttcatccaacaagatcaggagcctgccggcagagctcggcaacatggtgtctctcagg
gaactgcttttaaataacaaccagttgcgggttctgccgtttgaattgggaaaactgttt
cagttacaaacactggggttaaaaggaaacccacttgcacaagaaattatgagcctgtac
caggaaccggatggcacgagaagactgctcaactacttgttagacaatctggctggggcc
atcaagcgcataccaacagagcagcccccggcacgatcatggatttctctccaagaacca
gaccgagcacggccatcagcactgttctctgtcatgtgctacaatgtgttgtgtgataag
tacgccacaaggcagctgtacggctactgcccctcttgggctctaaactgggagtacagg
aaaaagtccatcatgcaggagattatgggttgcaatgcggacatcatcagtttgcaggaa
gtggagacagagcagtactacaattatttcttccctgagctgaaggaacagggttatgat
ggcttcttcagtccaaagtcacgagctaggaccatgtcagagtcggaccgcaaacatgtg
gatggctgtgcaattttctacaagacagaaaagtttagtgcagtacagaaacacacagtg
gagtttaaccagttggcaatggctaactcagagggctcagaagccatgttgaaccgtgtg
atgacgaaggacaacatcggggttgctgtattgctcgaagtccgcaaagagatgatggaa
gtctcctctggaaagtcactgcacggcatggagaagcaactgctgttggtagccaacgcc
cacatgcactgggacccggaatactctgatgttaagctggttcagaccatgatgttcctt
tcggaagtgaagaacattgtggacaaggcaacgcgcagcctcaagttgtcttcggtctct
ggtgaaactaatgggattccactggtgctctgcgctgacctcaactctttgcctgactct
ggagtggtggagtacttaagtacgggtggagtggactgcacccacaaggacttcaaggag
cttcgctacagtgacagtctgaccaaattcaactgcaatggcaagaacagcacgtccaat
ggcaggatcacccacggcttcaagctgaaaagcgcttacgagaacggcctgatgccttac
accaactacacatttgacttcaagggtgtcatcgactacattttctattccaagcctcac
ctgaacgtcctgggcatcctgggtcccctggatcctcactggctggtagagaacaatgtc
agcggctgcccgcacccccacatcccctctgaccacttcagtcttttcacccagttggag
ttgctcttgcccaacatacccccccaggtcaatggcctccatttgcctgcacgcaggtag
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