Syngnathoides biaculeatus (alligator pipefish): 133508847
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Entry
133508847 CDS
T09681
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbia03000
]
133508847 (ssrp1a)
03036 Chromosome and associated proteins [BR:
sbia03036
]
133508847 (ssrp1a)
Transcription factors [BR:
sbia03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
133508847 (ssrp1a)
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
133508847 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
POB3_N
SSrecog
HMG_box
HMG_box_2
HMG_WDHD1
SSRP1_C
FERM_C1_MyoVII
Motif
Other DBs
NCBI-GeneID:
133508847
NCBI-ProteinID:
XP_061691302
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All DBs
Position
11:522963..558378
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AA seq
709 aa
AA seq
DB search
MGDTLEFNEIYQEVKGSWNDGRLRFSKQNVVYKSSKTGKVDSIPAGELNLAQWRRVCLGH
GIKLSTNTGHIYKYDGFRDTDFEKISEFFKANYSVELTEKDMCVKGWNWGTAKFSGPLLL
FDVNETTAFEVPLSNVSQCATGKNEVTLEFHQNDDAEVSLMEVRFYVPPGQADERQDPVE
AFAQNVLSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEENISLSLNMSEEDVERRFE
GKLSKNMSGSLYELVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVN
AKKLNIKNRGFKEGIKGKIDEYSDSDEDKHDAYLERMKAEGKIREEGNDSDDSDSGSDES
FNPGEEDDDIAEEYDSKASASDSSEEGDRSEDDSPKKKKVAKPKVVKEKKERKPRKEKKQ
KDKGGPKRPMSAYMLWLNSSRERIKSENPGISVTEISKKAGEMWRQLGKDEKEEWERKAG
EAKRQYDIAKKEYKESGGGESSISKKEAKKSGGKKDDKKRKSSGGDKERERGGGNESFKS
KEFIETSESSSDSDNKSKSKKKRKKKESEEEDEEEDAASTPASSEEESD
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacactggagtttaatgaaatataccaggaagtcaaaggttcatggaatgac
ggccgattgcgtttcagcaagcagaacgtggtctacaagagcagcaagactggaaaggta
gacagcatcccggcgggcgaactcaacctggcccagtggcggcgcgtctgtttaggtcac
ggcatcaagctgagcaccaatacaggtcacatctacaaatacgatggcttcagggacacg
gactttgagaagatctctgagttcttcaaagcaaactacagcgtggagcttacagagaag
gacatgtgcgtgaaggggtggaattggggaacggccaaattctccggtccactgttattg
tttgatgtgaatgagaccacagcgttcgaagtcccactatcgaatgtgtcacagtgcgcc
acgggcaagaatgaagtcaccttggagttccaccagaacgacgacgctgaggtctcgctc
atggaggtccgcttttatgtcccacccggccaagctgacgagcggcaagaccctgtggag
gcctttgcccagaacgtgctatcgaaggcagatgtgatccaggccacgggagatgctgtg
tgtattttcaaagagctgcagtgtcttacacccagaggaagatatgacatccgcatctac
ccaactttccttcacctccatggtaagacgtttgactacaagattccctacaccactgtc
ctccgtctattcctgctgccacacaaggaccagaggcagatgttctttgtgatcagtctg
gatcctcccattaagcaaggccagacgagatatcacttccttattctgcttttctccaaa
gaggagaacatcagcctttccctcaacatgagcgaggaagatgtggagcgacgctttgag
ggaaaactcagtaagaatatgtctgggtcgctctacgagctggtcagcagggtgatgaag
gccctggtcaacagaaagatcacagtgcccggaaacttccagggtcactctggtgctcag
tgcatcacatgctcctacaaggcatcctcggggctcctttatccactggagaggggcttc
atctacgtccacaagccccccgtgcatctgcgcttcgaggagatctcctgcgtcaacttc
gcccgaggcaccaccacgactcgctccttcgactttgagattgagaccaagcagggcaac
cagtacaccttcagcagcattgagagggaagaatatggaaaactttttgactttgtcaat
gctaagaagctcaacatcaagaacagaggtttcaaagagggcatcaagggcaagatcgat
gagtacagtgactctgacgaagacaagcacgacgcctacttggagcgcatgaaggctgag
ggcaagatcagagaagagggcaatgacagcgatgattccgacagcggcagtgatgagtct
ttcaaccctggcgaggaggatgatgacattgcagaggagtacgacagcaaagcatcagcc
agcgacagcagcgaagaaggcgacagaagtgaggatgacagtccaaagaagaagaaagtc
gcaaagcccaaagtagtgaaggagaaaaaagaaagaaagccacgcaaagagaagaagcag
aaagacaaaggcggccccaagcggccgatgagtgcctacatgttgtggctcaattccagc
cgtgagagaatcaagtctgagaaccccggaatctcagtcacagagatctcgaagaaggcc
ggagaaatgtggaggcagctgggcaaagacgagaaagaggagtgggagagaaaggcagga
gaagccaagaggcagtatgacatcgcaaaaaaagagtacaaagaaagtggtggtggagag
tcttccatttccaagaaggaggccaagaagtctggaggcaaaaaggacgacaagaagcgc
aagtcatcaggaggagacaaggagagggagcgtgggggcggcaacgagagcttcaagagc
aaagagttcattgagaccagcgagagctcgtctgactcggacaacaagagcaagtccaag
aagaagaggaagaagaaggaatctgaagaggaggatgaggaggaagatgctgcatccaca
cctgcaagctcagaggaggagtccgattaa
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