Syngnathoides biaculeatus (alligator pipefish): 133508893
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Entry
133508893 CDS
T09681
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03013
Nucleocytoplasmic transport
sbia03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133508893 (upf3b)
03015 mRNA surveillance pathway
133508893 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133508893 (upf3b)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133508893 (upf3b)
mRNA cycle factors
P-body specific factors
133508893 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
133508893
NCBI-ProteinID:
XP_061691404
LinkDB
All DBs
Position
11:27379181..27388894
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AA seq
460 aa
AA seq
DB search
MKEDKENTRPRERRVEIMCEDLDRTEKSKEKKETMTKIVIRRLPPNLTKEELEEQLQPLP
EVDYLEFFSNDTSLYPHLFARAYINFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFAP
FQKTSKKRSKKKDTKCGTISDDPDYKKFLEYYTGDNEKLTSTPETLLEEIEARSKELVAK
RTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEERRKRKGAEKIKKLDK
MPENEKDQVKDEPKIKLLKKPDRGDDPDLDKSREKFKKTERPCKEESRISDHKRRQNSDS
KEERTKKVDEEGCKEFREHDAERELEKEHQQRERERMRRQERRRRRERHDGENIGRKWAE
EEGPSKKERERPLDKKRPDNASESDKMEKTPKDNKKDDSAKRERLRNKDRPAIQLYQPGA
RSRNRPATAAAAGGGGGGEASSMDRKPETEMKKMADKGDD
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaagaaaacacccgacctcgggagaggagggtggaaataatgtgtgaa
gatttggatcggacggagaagtcgaaggaaaagaaagagaccatgacaaagattgtgatc
agaaggctgccaccaaatctcactaaggaggagctggaggaacaactgcaacctcttccc
gaagtggactaccttgagttcttctccaatgacaccagcctgtatcctcacctctttgcg
agggcctacatcaacttcaaaaaccaagaggatatcgtcctgttcagagatcgctttgac
ggctacgtgttcattgacaacagaggacaagagtaccctgccattgtggaatttgcacct
tttcaaaagacatccaagaaaagaagcaagaaaaaggataccaagtgtggaaccattagt
gacgatcctgattataagaagttcttggagtattacacaggtgacaatgagaagttgaca
tccacacctgagactctgctagaagagattgaagccaggtcgaaggagctagtagctaaa
agaacaactcccctgctggattttctgaagaataaacagagaatcagggaggagaagaaa
gaggagagaagacggcgggagctggaacgaaagcgcctccgtgacgaggagcgccgcaag
tggcgcgaggaggagcgacgtaagcgcaaaggagctgagaagattaagaaactggataaa
atgccagagaatgagaaggaccaagtcaaagatgagccaaaaatcaaactgcttaagaag
ccagacagaggagatgatcccgacttggacaaaagtagggagaagtttaaaaaaaccgag
aggccttgcaaagaggaaagcagaatctcggaccacaaacgacgacaaaacagtgacagc
aaggaggagcggacaaagaaggttgacgaggaaggctgcaaggagttcagggagcatgat
gccgagcgcgagctggagaaggagcatcaacagagagagcgagagcgcatgaggcggcag
gagcgacgcaggaggagggagaggcacgatggcgagaacattggtaggaagtgggcagag
gaggaggggccttcgaagaaggagagggagcggccactggacaaaaaacggcctgacaac
gcttcagaatctgacaagatggagaagacgcccaaagacaacaagaaggacgacagtgcc
aaacgagaacgtctacggaataaagatcgtcctgctatccagttgtaccagcccggagca
agaagccgcaatcggccagcaacagcagcagcagcaggaggaggaggaggtggtgaagcc
agctcaatggacaggaagccagaaaccgaaatgaaaaaaatggctgacaagggtgacgac
tga
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