Syngnathoides biaculeatus (alligator pipefish): 133509189
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Entry
133509189 CDS
T09681
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b
KO
K04834
voltage-gated sodium channel type II alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sbia04040
]
133509189 (scn1lab)
Ion channels [BR:
sbia04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
133509189 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
Spem1
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
133509189
NCBI-ProteinID:
XP_061691957
LinkDB
All DBs
Position
2:14972549..15016594
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AA seq
2013 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPECLAAIERRIAEEEAQRPRAERRSDCDDENGPKPNSDLEAGK
SLPFIYGDIPPGLVSTPLEDLDSYYSNQKTFIVLNRGKAIFRFNATPALYILSPFNPLRR
IAIKVLVHSMFSVLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRLPIPGNDTNSSYTGGADNSS
QAEVNDTFLNSTESGFNWIEHISNDKNYYYLPGRRDALLCGNGSGAGLCPEGFICVKAGL
NPDYGYTSFDTFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMVFFVLVIFLGSFYLVN
LILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATDSAEYSERGG
ATSGSSSVASKLSSKSAKERRNRRKKRKQKEEEEEDRGPGNKFHKSMTVDSINRSFHFSI
DANRLSYEKRCSSPNQSLLSVRESLFSPRRNSQVSLFSFRGRVRDMGSENDFADDEHSTF
EESDSRRGSLFLPRRLERRCSTVSQMSLRVPRITLPANGKMHCTVDCNGVVSLVGGTSGT
NSPVGLLLPEGTTTDTEVRKQRSVDYLGEPGSRQRAMSVASILTNTMEELEESRQKFPPC
WYRFANTCLIWDCCPTWLKIKEFVNMVVMDPFVDLTITICIVLNTLFMAMEHYPMTKEFN
YVLSVGNQVFTGIFTAEMCLKVIALDPYYYFQEGWNIFDGIIVSLSLMELGLSNVEGLSV
LRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYK
EFVCNINDDCQLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVSGPTMCLIVFMMVMV
IGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQRGIAFLKSTVRQFVQSL
FIDRSGKGSNLPEESKPLEELHSNGKGNCITNHTTVEMTKDPGGIYMTAEGNGRPGGGLV
VGGMIEGDSTEKYPIDECHYMSFIHNPSLTVTVPIAVGESDFENLNTEDLSSDSSDVEGS
KEKLDTEPKHLSSSEGSTVDIRPPGDGVDSVELEPEESLEPEACFTDGCISRFQCCEVNE
EAPGFKSWWTLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRRTIKTMLEYAD
KVFTYVFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSELTAIKSLR
TLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYYC
INTTTDEVFPIEEVNNKSDCLNLVNDSARWKNVKINFDNVGAGYLALLQVATFKGWMDIM
YAAVDSRDLEEQPKYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDI
FMTEEQKKYYNAMKKLGSKKPQKPIPRPANEFQGCVFDCITKQAFDIVIMILICLNMVTM
MVETDDQTEEMDTILYWINMVFIVLFTGECVLKMISLRHYYFTIGWNIFDFVVVILSIVG
MFLSEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLF
LVMFIYAIFGMSNFAYVKQESGIDDMFNFETFGNSMLCLFQITTSAGWDGLLAPILNKWE
PDCDSQMEHPGNNYKGNCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAE
PLSEDDFEMFYEVWERFDPDATQFMEYSKLSDFADALDPPLRMPKPNMIQLISMDLPMVS
GERIHCLDILFAFTKRVLGEGGEMDVLRGQMEERFMASNPSKVSYEPITTTLRRKQEDMS
SIIIQRAFRRYMICMAMKKASALYKEQLKEGLRDPDKDVMVISKFNENSISDKTDITPST
ASPPSYNSVTKSDKDKYEKENGEKKKDLKERKK
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctgctggtaccgcctggtcctgacagcttccgcccctttgtcccggaatgt
ctggccgccattgagaggcgcatcgccgaagaggaggcccagagaccacgggccgagcgg
cgcagcgactgcgatgatgaaaatgggcccaaacccaatagtgatttggaggcaggaaaa
tcacttcccttcatctatggtgacatccctccaggtttggtgtccactcctctggaggat
ttggacagctattacagcaatcagaagacattcatagtattgaatcgtgggaaggcaatc
ttccgtttcaacgccactcctgccttgtacatcttaagccccttcaaccctctgaggagg
atagctattaaggttttggtacactcgatgttcagcgtgttgatcatgttcaccatccta
accaactgtgcttttatgaccctaagtaaccctccggaatgggccaagaatgtagaatac
acattcacaggaatttacacttttgagtccctcataaagatcctagccagaggcttttgc
gtggggaagttcacctttctacgtgacccttggaactggctggactttagtgttatcctc
atggcatatgtcacagagtttgtggacctgggcaatgtatcagcactgcgaaccttcagg
gttctgcgggccctgaaaactatatcggtcatcccaggcttgaagacgatagttggtgca
ttgatccagtcagttaaaaagctgtcagatgtgatgatcctgacagtgttctgcctcagc
gtgtttgctctcattggcctgcagctcttcatgggcaatctgaggcagaaatgtgtgcgc
ttgccaatccctggcaatgacaccaacagcagctatactggtggcgctgacaacagcagc
caagcagaagtcaatgacacattcttgaacagcacggagagtggcttcaactggatagag
cacatcagtaatgacaaaaattactattacctccctggtcgcagggacgctctcctctgc
ggaaatggcagcggggctgggctttgtccagaaggctttatttgtgtcaaagcgggcctt
aatccagactatggatacacaagttttgacactttcagttgggctttcctgtctctgttc
agactcatgacccaggactactgggaaaacctctatcagcagactttgcgagcggcaggg
aagccctacatggtcttcttcgttttagtgatcttcctgggttccttctaccttgtcaat
ctgattttggctgttgtggccatggcttatgatgagcagaaccaggccaccatagaggag
gctcaacagaaagaggaggaattccaggccatgctggagcaactgaagaggcagcaggag
gaagcacaggttgccgcggcagcagccacggatagcgccgagtacagcgaaagggggggg
gccacctctgggtcctcctcagtggcatccaagctcagctcaaaaagtgcaaaagagcga
cgcaacaggcggaagaaaaggaaacagaaagaggaagaggaggaggataggggaccaggc
aacaagttccataagtctatgaccgtggatagtatcaacagatccttccacttctccatt
gatgctaaccgactttcttatgagaagcgatgctcctcacccaatcagtctctgctcagt
gtacgtgagtcactcttctcaccacggagaaacagtcaagtcagtctcttcagcttccgc
ggacgagtacgtgacatgggttcagaaaacgactttgcggatgacgagcatagcaccttc
gaagaaagcgacagccggcgtggctccttgttcttgccacgtcgcctcgagcgtcgttgc
agcaccgttagccagatgagtctcagggtacctcgtatcacgctacctgccaatgggaag
atgcattgcacggtggactgcaatggcgttgtttcgctggttggaggaacatctggaact
aactctcctgttggtctcctgctgcctgagggtaccacgacagacaccgaggtgagaaaa
caacgctcagttgactatttaggtgaaccaggaagcaggcaaagagccatgagtgtggcc
agcatccttaccaacaccatggaagagcttgaagagtcgaggcagaaattccccccttgc
tggtatcgatttgccaacacttgtttgatctgggactgttgccctacctggcttaaaatt
aaggagtttgttaacatggtggtcatggacccatttgtggatctaacgatcacaatttgc
attgttctcaacaccctttttatggccatggagcattacccaatgacgaaagaattcaac
tatgtcctttctgttggaaaccaggtatttactggtattttcacagcagagatgtgcctc
aaggtcatcgctctggacccttactactacttccaggaggggtggaacatttttgacggc
ataattgttagtctgagtctaatggagttgggattgtccaatgttgagggcctttctgtg
ctcaggtccttccgactgctgagggtattcaaactggctaaatcctggccaactctgaac
atgctgatcaagattattggtaactcagtgggggctctgggtaacttgaccctggtgctc
gctatcatcgtcttcatcttcgccgtggtgggcatgcaacttttcggcaagaactacaag
gagttcgtctgtaacataaacgatgactgtcagctaccacgctggcacatgcatgatttc
ttccactccttcctcatcgtcttccgggtgctgtgtggagagtggatagagactatgtgg
gactgtatggaggtatcgggaccaacaatgtgtctgattgtcttcatgatggttatggtc
atcggaaacttggtggttctgaacctgttcttggctctgcttctgagctcattcagcgct
gacaatttggctgcaactgatgacgacagcgagatgaataacttgcaaattgctgtgggc
cggatccagcgtggaattgcttttttaaaatctacagtacgacagttcgtccagagcctg
ttcattgatcgcagtgggaagggctccaacctacctgaagagagcaaacccttagaagaa
ctacatagcaatggcaaaggcaactgcatcaccaatcacacaacagtagaaatgactaaa
gaccctggcggtatatacatgacagctgaggggaacggccgtcctggaggaggccttgtt
gtagggggcatgattgagggggacagcactgaaaagtaccccatcgacgaatgtcactat
atgtcctttattcacaatcccagcctgacagtcacagtgcctattgctgtgggtgagtca
gactttgagaacctgaatacagaggacttaagcagtgattcctccgatgtggaaggcagc
aaagagaagctcgacacagagccgaaacatctcagctcttcagaagggagcactgttgat
atacgccccccaggagatggggttgattcagtggaactggagcctgaggagtcactggag
ccagaggcctgctttactgacggatgcataagcagattccagtgttgcgaggtcaatgag
gaagcacccgggtttaagagctggtggacactcaggaaaacgtgttttataatcgtggag
cacaactggtttgaatcctttattatatttatgatcctgctcagcagtggagcactggct
tttgaggacatatatattgaacagaggaggaccatcaaaacgatgctggagtatgcagac
aaggtctttacttatgtcttcattctggagatgctgttgaagtgggtggcctatggattt
gtcaagtacttcaccaacgcctggtgctggctcgacttcctcattgttgatgtgtccctt
gtcagccttgtggccaatgcgttgggctattccgagctcaccgcgatcaaatccctgagg
acactgcgagccctccggcctctgagagccctatctcggttcgagggcatgagggttgtg
gtgaacgcactactgggggccatcccctccatcatgaatgtgctgctggtctgcctcatc
ttttggctcatcttcagcatcatgggcgtcaacctattcgcagggaagtattactactgc
atcaacacgaccactgacgaggtgttccccatcgaggaagtcaacaacaagtctgactgc
ctgaatttggtcaacgacagcgcccgatggaaaaacgtcaaaatcaattttgacaatgtt
ggtgctggctatttggcgctgttgcaagtggcaacatttaagggctggatggacattatg
tatgcagctgtggattctcgtgatctggaggaacagcccaaatatgaagtgaacttgtac
atgtatctgtactttgtcatcttcatcatctttggttctttctttacactcaacctgttc
attggcgttatcattgacaatttcaaccagcagaagaaaaagtttggagggcaagatatc
ttcatgacagaggaacagaagaaatattacaatgctatgaagaagttaggctccaagaaa
ccacaaaaaccaattcctcgaccagcaaatgaatttcaaggctgtgtgttcgactgcata
acaaagcaggcttttgacattgttatcatgatcctcatctgcctgaacatggtgaccatg
atggtggagactgatgaccaaactgaagagatggacacgatcctttactggatcaacatg
gtcttcattgtgctcttcacaggagagtgtgtattaaagatgatctccttgcgtcactat
tacttcaccataggttggaatatatttgattttgtggtggtgatcctgtcaatcgtaggt
atgtttttgtcagaaatgatcgagaaatactttgtttccccgacattattccgagtgatc
cgtctggccaggatcggccgcattctccgccttattaagggtgctaaaggcattcggact
ctcctcttcgccctgatgatgtcacttcctgctctatttaacattggtcttctcctcttc
ttggtcatgttcatttacgctattttcggcatgtccaattttgcctacgtcaaacaggag
tctggaatcgacgacatgttcaattttgagacctttgggaacagtatgctctgtttgttc
caaatcactacctcagctgggtgggatggtctgttggcacccatcctgaacaagtgggaa
cctgactgtgatagccagatggaacacccaggcaacaactacaaaggcaactgtggcaac
ccatcagtgggtattttctttttcgtcagctacatcatcatttgtttccttattgtggtc
aacatgtacatcgccgtaatcctggagaacttcagcgtggcaacggaagagagtgccgag
ccactgagcgaggatgactttgagatgttctacgaagtgtgggagcgttttgaccctgac
gccacacagttcatggagtacagcaagctctcagactttgccgatgcacttgacccgccc
ttgcgtatgcccaagccaaacatgattcagctcatctctatggacttgccgatggtcagt
ggcgagcggatccactgcctcgacatcctttttgccttcaccaagcgagtactcggggaa
ggcggtgagatggacgtgttgcgtggacagatggaagaacgttttatggcatcgaacccc
tcaaaggtctcgtacgagcctatcaccactactctccgccgcaaacaggaagacatgtcc
tccatcatcatccagagagcctttcgccgctacatgatttgcatggccatgaaaaaggct
tcggccctctacaaagaacaactgaaagaaggattacgtgaccctgacaaggacgtgatg
gtcatcagcaagttcaatgagaactctatctcagacaaaacagacatcaccccttctaca
gcttccccaccctcttacaacagcgtgacaaaatctgacaaagacaaatatgagaaagaa
aatggtgagaagaaaaaagatttgaaagagcgaaagaaatag
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integrated database retrieval system
