Syngnathoides biaculeatus (alligator pipefish): 133509366
Help
Entry
133509366 CDS
T09681
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133509366 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbia04121
]
133509366 (herc4)
Enzymes [BR:
sbia01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
133509366 (herc4)
Ubiquitin system [BR:
sbia04121
]
Ubiquitin ligases (E3)
HECT type E3
133509366 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
QSregVF_b
Motif
Other DBs
NCBI-GeneID:
133509366
NCBI-ProteinID:
XP_061692213
LinkDB
All DBs
Position
12:complement(17713723..17727408)
Genome browser
AA seq
1047 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIVVEPRRCDFFHAKLVRDVGCGRKHTAFVLDDGTVYTCGC
NDLGQLGHEKSRKKPEQVVALDAQIITAVSCGESHTLALNDSGQLFSWGLGSDGQLGLNN
YEESVRVPRNIKALTDVQITQVACGYWHSLALSKGSQIFSWGQNRYGQLGLGVNGQCLSN
PQIIQSLQGIPFAQISAGGAHSFALTLSGAVFGWGRNKFGQLGLNDSNDRCFPTLLKSLR
SQKVIFVSCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEINPRKVFELMGNIVTQVA
CGRQHTLAFTPSCGKMDSFGLGGNGQLGTRSSSNRKSPGPVKGPWIHSVDSEGRVMDQDC
CIKKIYAGGDQSFAHYSTVNSLQNSDDVATPDAQRRVCTLNEETIQRWLNHTPGRLPLEI
SNEIDLVFSTASCLNGSFLSMSHPNHYSTSNKCSGTDVNMARLLFHKLISSDYPEITQLI
AASMEKNLIPRLSNSPPDIEALRLYLTLPECPLFSDPNNYVTISIPFAKSLISLKEAALK
VLGNWWSTFEPQVFQRLVELYKEVVVYLLQMHKVGIPSTEQRIFTSFLDTSLRLLEILHV
VNERGGHIIQYDKFYIHELEDLIDIRNDYITWIQRQMYPSGQDGVVTMCRYPFVFDALAK
TTLLQTDAVLQMQMAVDQAQMQNLSSMFLPAVESVNPCLILIVRRENIVGDTMEVLRKSK
NVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMKELLDPKYGMFRYHEESRLLWFSSKTFE
DIDLFNLIGVICGLAIYNLTIVELNFPVALYKKLLKRNPTFDDLKELKPDVGRSLQLLLD
YPEDDIEETFCLNFTITEENYGATEVLELIPNGENINVKKSNRQDFVNAYVDYTFNTSVA
PLFECFYAGFHKVCGGKVLELFQPNELQAMVIGNTNYDWTELEKSTEYKGDYWADHQTIK
LFWQVFHNLPLEKKKEFLLFLTGSDRIPILGMKSLKLVIQPTSGGEHYLPVAHTCFNLLD
LPKYTNAETLREKLLQAIDHNQGFNLA
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgttggggcaatgcttcctacggccagcttggtttgggaggcattgatgaagag
atagtggtggagccgaggagatgcgacttcttccacgcgaagctagtgcgcgatgtaggc
tgcggtcgcaagcacacagccttcgtgctggacgatggcacagtgtacacgtgtggctgc
aacgatctcggtcaactgggccacgagaagtcccgaaagaaaccagagcaggttgtggct
ttggatgctcagatcataacagcagtgtcttgtggagagtcgcatacacttgccttgaat
gacagcgggcagcttttctcatggggcctgggctcagatgggcagcttggcttaaacaac
tatgaggaaagtgttcgtgtgcctagaaacatcaaggctttgactgatgttcaaatcact
caggtagcctgtgggtactggcactcactagcactttcaaaagggagccagattttctcc
tggggacagaatcgatatggacaacttgggcttggagtcaatggccaatgcctttctaac
ccccaaattattcagtctctgcagggcattccttttgctcaaatatcagcaggtggagct
cacagctttgcactcaccctctcaggagctgtgttcggttggggccgtaacaagtttggt
caacttggtctcaatgacagcaacgaccggtgttttccaactttgctgaagtcgcttaga
tcgcagaaagttatttttgtctcctgtggagaagatcacacagcagccctgaccaaggaa
gggggcgtctttacatttggagcagggggatatggtcagttggggcataactctacaaat
catgaaatcaacccaaggaaagtctttgagctcatgggaaacatagtcacccaggttgcg
tgtggaaggcagcacacactggcttttacaccctcatgcggaaagatggactcatttggt
cttggaggaaatggacagcttggtacccgttccagctctaacaggaaaagcccaggcccc
gtcaagggcccctggatacactctgttgattcagagggtagagttatggatcaggactgt
tgtatcaagaaaatttatgccggaggagaccaaagttttgctcactattctactgtcaat
agcctgcaaaacagcgatgatgtggcgacaccagatgcccaacgaagagtttgtaccttg
aatgaggaaaccatccagagatggctgaaccatacaccaggaagactgccactagaaatc
tccaatgaaattgacctggtgttctcaactgcaagctgcctcaatggatccttcttgtct
atgagtcatccaaatcactacagtaccagcaataaatgttccgggactgacgtgaacatg
gcccgtcttctatttcacaaactgatctcaagtgactaccctgagatcacccaactgatt
gctgcaagtatggagaagaatctaattccccgactaagcaactcccctcccgacatagaa
gcactgagactctacctcactcttccagaatgtcctctcttcagcgatcccaacaattat
gtgacgatctccatcccatttgccaaatctctcatcagcttgaaagaagcggcacttaaa
gtgttaggaaactggtggtctacatttgagccccaggtcttccagcggctggtcgagttg
tacaaagaagtggtggtttacctgctccagatgcacaaggtgggaatcccatcaacagag
caaagaattttcacttcttttctggacacgtcactccgactgctggagatcctccacgtg
gtcaacgagcgaggtggacacattatacagtatgataaattctacattcatgagttggaa
gacttgatagacatccgaaatgactacatcacatggattcagagacaaatgtacccaagt
ggtcaagatggtgtggtgacaatgtgcaggtatccctttgtatttgatgccctggcgaag
actactctgctacagactgatgctgttttacaaatgcagatggcagtggatcaggctcaa
atgcaaaacttgagttccatgttcttgcctgctgtggaatctgtaaatccctgcctcatc
ctcatcgtccggagggaaaatatagttggagacaccatggaagttctcaggaagtcaaag
aatgtcgactacaagaagccgctcaaggtcatctttgtgggagaagaggcagtggatgca
ggaggtgtgagaaaggagttctttctcttgatcatgaaagagctgttggatccaaagtat
gggatgttccgttaccatgaggagtcaaggctcctctggttttcaagcaagacctttgag
gacattgatttgtttaacctcattggagtcatctgtggtctcgcaatctacaacctcacc
attgtggagctgaacttcccagtggccctgtacaaaaagcttctgaaaaggaatccaaca
ttcgatgacctgaaggagctcaagccagatgtgggaagaagtctccaactgttactggac
taccctgaagatgacattgaggaaaccttctgcttgaactttacaatcacagaggaaaac
tatggtgctacagaggtgttggagctcatacccaacggtgaaaacatcaatgttaaaaaa
tccaacaggcaggacttcgtcaatgcttacgtggactacacgtttaacacctcggttgcg
ccactatttgagtgtttctatgcaggcttccacaaggtgtgtggaggcaaagttctggag
cttttccagcccaatgaactgcaagccatggtgattggcaacaccaactatgactggact
gaacttgaaaagagcactgaatataagggagactactgggcagaccatcagaccatcaaa
ctcttctggcaagtgttccacaaccttcctttagagaagaagaaagagtttctcttgttt
ctcacaggaagtgatcgcatacccattttgggcatgaaaagccttaaactagtgatccag
ccaaccagtgggggagaacattacttgcccgtcgcccacacatgcttcaaccttttggac
ctgcccaaatacactaatgcagaaacactgcgtgagaagcttcttcaagctatagatcat
aatcaaggcttcaatctagcctga
DBGET
integrated database retrieval system
