Syngnathoides biaculeatus (alligator pipefish): 133509421
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Entry
133509421 CDS
T09681
Symbol
dis3
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133509421 (dis3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133509421 (dis3)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
133509421 (dis3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Dis3l2_C_term
TubZ-like_C
Motif
Other DBs
NCBI-GeneID:
133509421
NCBI-ProteinID:
XP_061692363
LinkDB
All DBs
Position
12:7565100..7579364
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AA seq
947 aa
AA seq
DB search
MLKSKTFVKKTRSGRVMKIVREHYLRDDIWCGSEACDQCQQESTVLQREACIESNLCSFS
HYLIPDTNVVLHQIDVLEAPVIRNVVILQTVLQEVRHRSAPVYKRLKDLVHEGERHFYTF
TNEHHRETFVERQPGESANDRNDRAIRVAAKWYSEHFANPDGPKVVLLTNDHANKQKAQE
NGLLVYKFEEYIKGLIANPELVDRLALSNDEKNDITSSRVLFPEHLPLSKIQAGIKSGAF
LQGTFKASRDNYLEAKVFIQKDEEDGTEVLIQGLQNLNRAVHQDVVAVQLLPRSQWVAPS
SVMLQDVGCAKDDDVEEEEKEDALRSSGGVADRKPTGKIVGIIKRSWRPFCGMLNVSQIK
ESTRHLFTPADRCIPRIRIETRQASTLAGQRIMVAIDGWPKDSRYPNGHFVRSLGVAGEK
DTEEEVLLLEHDVPHQAFSQAVLSFLPKMPWSIKPEDMVGREDLRDLTVCSVDPPGCTDI
DDALHCRELGNGNFEVGVHIADVSHFIRPGNALDKEAANRGTTVYLCGKRIDMVPELLSS
NLCSLRSNVDRLAFSSIWEMNQKAEVLKTRFTKSVINSKASLTYAEAQMRIDDTSKNDDI
TKSLRSLNKLAKILKKHRIEKGALTLSSLEVRFHMDSETHDPIELQTKELMETNSMVEEF
MLLANISVAQKIYAEFAECALLRKHPAPPPSNYDILLKAAKSKDVLIHTDSAKALADSLE
AAKVDGFAYFNTLLRILATRCMMQAVYFCSGMDSDFHHYGLASPIYTHFTSPIRRYADII
VHRLLAVAIGADSTYPDLTDKHKQSALCNNLNYRHKMSQYAQRASVAFHTQLFFKSRDVL
SEEGFVLFVRKNAIIVLIPKFGLEGTVFFDGKDKSVPNLVFDEERPSLTVEQHTFHIFDR
VKVTVSLDDSNIQHQKIRMALTEPVIPGVSVSATDVDKPNKKPKLDR
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagtcgaaaaccttcgttaagaagacccggtccggccgggtgatgaaaatagtg
cgcgagcattacctgcgagacgacatttggtgtggaagcgaggcgtgcgaccaatgccaa
caggagtccaccgtgctgcagagagaagcgtgcatcgagagcaacttgtgctccttttcg
cattacctcatcccagacactaatgtggtgctgcaccagattgatgttttggaggccccc
gtgattcgtaacgtggtgatcctccagaccgtgctccaggaagtccgccaccgcagcgcg
ccggtctacaaacgtctcaaggacctcgtccacgagggagaaagacacttctacaccttt
accaatgagcaccacagagaaacattcgtcgaacgccaacccggggagagcgccaacgac
cggaacgaccgagcgatccgtgtggcggccaaatggtacagcgagcacttcgcgaatccc
gatggccctaaggtggtgctcctaactaatgaccacgctaacaaacagaaggcacaagaa
aacggcctgttggtgtacaaatttgaggagtacatcaagggcctgatagccaaccccgag
cttgtggatcgcctggcgctgtcaaatgatgaaaagaacgatatcaccagcagtcgggtg
ttattccccgagcacctcccgctgtccaagatccaggccggcatcaagagcggtgccttc
ctccagggcaccttcaaggcaagcagggacaactacctggaggccaaagtcttcatccaa
aaagacgaggaagacggcacagaggtgctcatccagggcctccagaacctgaacagagcc
gtgcaccaagatgtggtcgcagtgcagctgttgccacgcagtcagtgggtggcgccctct
tccgtcatgctgcaggatgttggctgcgccaaggacgacgacgtcgaagaagaggagaag
gaggacgctctgaggagttcgggaggtgttgcagacaggaagcccaccggcaaaatagtg
gggatcatcaaaaggagctggaggcccttctgtggcatgctcaatgtttcccaaattaaa
gagtcgacgcgtcaccttttcacgcctgcggaccgctgcattccacgcatccgcatcgaa
acgcgccaggcgtccaccttggcgggccagaggatcatggtggccatcgacggctggccc
aaagactccagatatccaaatggtcactttgttcgtagtttgggggtggcaggggagaag
gatacagaagaggaagttctgctgctggagcatgatgttccccatcaggccttctctcag
gcggtgctcagttttcttcccaaaatgccgtggagcatcaaaccagaggacatggtggga
agggaggacctgagggatctgacagtgtgcagcgtggatcctcccggatgcacggacatt
gacgacgcgctccactgcagagagctgggcaacgggaacttcgaagtgggagtccacatc
gcggacgtcagtcacttcatcagacccgggaacgcgctggacaaagaggctgccaaccga
ggcacgacggtttacctttgtgggaagaggatcgacatggttcccgagctgctgagctcc
aatctctgttcgttacggtccaacgtggacaggctggctttctcatctatctgggaaatg
aatcaaaaggccgaagttctgaaaacacgcttcacgaaaagtgtcatcaactccaaggca
tctctgacctacgcagaggcccagatgaggatcgacgacaccagcaagaacgacgacatc
accaaaagcctccgcagcctcaacaagctcgccaaaatcctcaagaagcacaggatcgag
aaaggggcgctgacgctgtcctccttagaggtccgcttccacatggacagcgaaactcat
gaccccattgagcttcagaccaaggagctcatggagaccaactctatggtggaagagttc
atgttgctggccaacatatcagtcgcccagaagatttacgccgagtttgctgagtgcgcc
ctgctgaggaaacatccagcaccgccgccttccaactacgatatactcctaaaggcagca
aagtccaaagatgtgctgatccacacggattcagccaaggcgctggccgactccctggag
gcggccaaagtggacggctttgcgtacttcaacacgctgctgcgcatcctggccacccgc
tgcatgatgcaggccgtctatttctgctcgggcatggacagcgacttccaccactacggt
ctcgcctctcccatttacacgcacttcacgtcgcccattaggaggtacgcggacataatt
gtccaccgccttctggccgtggccatcggagcggacagcacctacccggatttgacggac
aaacacaaacagtcggcgctgtgcaacaacctcaactacaggcacaaaatgtcgcagtat
gctcagagggcgtctgtggccttccacacgcagttgttctttaagagcagagacgtcctg
agcgaggaagggtttgtcctctttgtgagaaagaacgccatcatcgtactcatccccaag
ttcggcctggagggaacggtcttcttcgacggcaaggacaaaagcgtccctaacctcgtg
tttgatgaggagcgtccatctctgacggtggagcagcacaccttccatatttttgaccgg
gtgaaggtcaccgtcagcttggatgactccaatattcagcaccagaagatacgcatggcc
ttgaccgagcccgtgatcccgggcgtgagcgtttcagccaccgacgttgacaagccaaac
aagaagcccaagctggaccgttga
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